|
| Status |
Public on Mar 09, 2017 |
| Title |
ChIP-seq from bipolar spindle neuron (ENCLB472FIM) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: Control
cell_type: bipolar spindle neuron
biomaterial_type: in vitro differentiated cells
description: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).
biosample encode accession: ENCBS374AAA (SAMN04284360)
age: 53 year
donor_id: ENCDO336AAA
dev stage: adult
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS374AAA at ENCODE; https://www.encodeproject.org/ENCBS374AAA/
link: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/69af4be8-3a50-4819-9642-ffb6db747469/@@download/attachment/whole_cell_extract_library_construction_v1.0.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR001KCX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR001KCX
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB472FIM
size range: 200-600
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Mar 09, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE95879 |
ChIP-seq from bipolar spindle neuron (ENCSR001KCX) |
|
| Relations |
| BioSample |
SAMN04284360 |
| SRA |
SRX2630453 |
