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Sample GSM2527377

Query DataSets for GSM2527377

Status

Public on Mar 09, 2017

Title

ChIP-seq from cardiac muscle cell (ENCLB528QAP)

Sample type

SRA

Source name

Homo sapiens cardiac muscle in vitro differentiated cells fetal

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
cell_type: cardiac muscle cell
biomaterial_type: in vitro differentiated cells
biosample encode accession: ENCBS806KLM (SAMN05897587)
age: unknown
dev stage: fetal
donor_id: ENCDO924HBJ
Sex: not collected
lab: John Stamatoyannopoulos, UW
link: ENCBS806KLM at ENCODE; https://www.encodeproject.org/ENCBS806KLM/
link: Derived from ENCODE donor ENCDO924HBJ; https://www.encodeproject.org/ENCDO924HBJ/

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR000NPF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR000NPF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR867SJE
encode release date: 2016-11-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB528QAP
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Mar 09, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE95878

ChIP-seq from cardiac muscle cell (ENCSR000NPF)

Relations

BioSample

SAMN05897587

SRA

SRX2630451

Supplementary file	Size	Download	File type/resource
GSM2527377_ENCFF332JKS_peaks_hg19.bigBed	4.8 Mb	(ftp)(http)	BIGBED
GSM2527377_ENCFF375GWU_signal_p-value_GRCh38.bigWig	781.5 Mb	(ftp)(http)	BIGWIG
GSM2527377_ENCFF474SFT_peaks_hg19.bed.gz	1.7 Mb	(ftp)(http)	BED
GSM2527377_ENCFF532XCR_peaks_GRCh38.bigBed	4.8 Mb	(ftp)(http)	BIGBED
GSM2527377_ENCFF547PIC_fold_change_over_control_hg19.bigWig	817.3 Mb	(ftp)(http)	BIGWIG
GSM2527377_ENCFF647NCL_signal_p-value_hg19.bigWig	728.4 Mb	(ftp)(http)	BIGWIG
GSM2527377_ENCFF898WQZ_fold_change_over_control_GRCh38.bigWig	818.1 Mb	(ftp)(http)	BIGWIG
GSM2527377_ENCFF918BRP_peaks_GRCh38.bed.gz	1.7 Mb	(ftp)(http)	BED
GSM2527377_ENCLB528QAP_README.txt.gz	1.7 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record