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Sample GSM252724 Query DataSets for GSM252724
Status Public on Dec 04, 2008
Title Control euthyroid CN_15
Sample type RNA
 
Source name Control euthyroid
Organism Mus musculus
Characteristics Mouse liver total RNA; mixed strain background (B6;129S); NCoRloxP/loxP; standard chow (Harlan Teklad F6 Rodent Diet 8664
Extracted molecule total RNA
Extraction protocol Total RNA from was isolated using Trizol as described above and further purified with RNeasy Mini kit per manufacturer’s instructions (Qiagen, Valencia, CA). 200 ng total RNA was then used for GeneChip analysis. Preparation of terminal-labeled cDNA, hybridization to genome-wide murine Gene Level 1.0 ST GeneChips (Affymetrix, Santa Clara, CA, USA) and scanning of the arrays were carried out according to manufacturer’s protocols (https://www.affymetrix.com).
Label Biotin
Label protocol WT labeling kit (www.affymetrix.com)
 
Hybridization protocol affymetrix
Scan protocol affymetrix
Description affymetrix
Data processing RMA signal intensity calculation
 
Submission date Dec 21, 2007
Last update date Dec 03, 2008
Contact name Martin Bilban
E-mail(s) Martin.Bilban@meduniwien.ac.at
Phone ++43 (0)1 40400 6441
Organization name Medical University of Vienna
Department
Street address
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL6246
Series (1)
GSE10001 Gene expression profiling in NCoR deficient mouse livers

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2)

Data table
ID_REF VALUE
10338001 11.69775
10338002 6.958034
10338003 10.44263
10338004 9.151414
10338005 1.541423
10338006 1.770132
10338007 2.215009
10338008 3.520922
10338009 9.421523
10338010 1.545008
10338011 6.07579
10338012 1.648067
10338013 1.42934
10338014 1.474262
10338015 1.435971
10338016 8.487999
10338017 12.59342
10338018 7.486827
10338019 5.390332
10338020 9.390891

Total number of rows: 35557

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM252724.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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