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Sample GSM2507197 Query DataSets for GSM2507197
Status Public on Feb 25, 2017
Title 20mGyG7/ reference male mouse2
Sample type genomic
 
Channel 1
Source name 20mGyG7
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name reference male mouse2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyG7 Cy5
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22217
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
35062 0.4654463
32124 0.390086
19992 -0.23177125
111316 -0.06790991
22131 -0.056075945
44606 0.06628435
113738 0.14926042
28916 0.44496596
96316 0.38758156
80468 0.41220984
96993 0.5175989
168307 0.19521162
104377 0.75172544
36277 0.24975212
9574 0.098146394
105499 0.093010575
82182 -0.05750036
161340 0.76179314
75369 0.3964167
63554 0.67753744

Total number of rows: 58203

Table truncated, full table size 1016 Kbytes.




Supplementary file Size Download File type/resource
GSM2507197_US84300232_253394210005_S01_CGH_107_Sep09_1_2.txt.gz 6.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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