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Sample GSM2507196 Query DataSets for GSM2507196
Status Public on Feb 25, 2017
Title reference male mouse2/ 20mGyG7
Sample type genomic
 
Channel 1
Source name reference male mouse2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name 20mGyG7
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyG7 Cy3
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22217
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
35062 -0.053805888
32124 -0.23918977
19992 0.10948702
111316 0.11385668
22131 -0.003499208
44606 -0.002916048
113738 0.14552574
28916 -0.001360319
96316 -0.14540362
80468 -0.20084687
96993 -0.13806075
168307 -0.39621186
104377 0.43323907
36277 0.115206935
9574 -0.41401443
105499 -0.194777
82182 0.46486372
161340 -0.5010425
75369 -0.28759614
63554 -0.4632659

Total number of rows: 58203

Table truncated, full table size 1020 Kbytes.




Supplementary file Size Download File type/resource
GSM2507196_US84300232_253394210005_S01_CGH_107_Sep09_1_1.txt.gz 5.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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