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Sample GSM2507190 Query DataSets for GSM2507190
Status Public on Feb 25, 2017
Title reference male mouse2/ 20mGyG4
Sample type genomic
 
Channel 1
Source name reference male mouse2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name 20mGyG4
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyG4 Cy3
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22217
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
35062 -0.16802809
32124 -0.16298878
19992 0.057389382
111316 -0.051769767
22131 0.09851404
44606 -0.047819182
113738 -0.07942879
28916 0.097075425
96316 -0.11945128
80468 0.26195845
96993 0.024142487
168307 -0.25563997
104377 0.35403445
36277 0.0734388
9574 -0.2629653
105499 -0.22039065
82182 0.13202265
161340 -0.34806216
75369 -0.19491173
63554 0.06793623

Total number of rows: 58203

Table truncated, full table size 1019 Kbytes.




Supplementary file Size Download File type/resource
GSM2507190_US84300232_253394210003_S01_CGH_107_Sep09_1_3.txt.gz 6.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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