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Sample GSM2507188 Query DataSets for GSM2507188
Status Public on Feb 25, 2017
Title reference male mouse2/ 20mGyG3
Sample type genomic
 
Channel 1
Source name reference male mouse2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name 20mGyG3
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyG3 Cy3
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22217
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
35062 -0.26484975
32124 -0.081963345
19992 0.005085064
111316 0.06502846
22131 0.06959345
44606 0.1442192
113738 0.06775811
28916 -0.031137459
96316 7.43E-04
80468 0.2251508
96993 -0.044007365
168307 -0.35719964
104377 -0.038325362
36277 -0.1657428
9574 -0.17268933
105499 -0.18391083
82182 0.3939064
161340 -0.5512822
75369 -0.3699293
63554 -0.23942278

Total number of rows: 58203

Table truncated, full table size 1020 Kbytes.




Supplementary file Size Download File type/resource
GSM2507188_US84300232_253394210003_S01_CGH_107_Sep09_1_1.txt.gz 6.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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