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Sample GSM2507187 Query DataSets for GSM2507187
Status Public on Feb 25, 2017
Title 20mGyG2/ reference male mouse2
Sample type genomic
 
Channel 1
Source name 20mGyG2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name reference male mouse2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyG2 Cy5
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22217
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
35062 0.13734873
32124 0.13198766
19992 -0.16925602
111316 -0.09765711
22131 -0.011885227
44606 0.010444287
113738 0.11711471
28916 0.2551849
96316 0.17132136
80468 0.2900241
96993 0.2861925
168307 0.419783
104377 1.7387741
36277 -0.20160918
9574 0.045812614
105499 -0.018629253
82182 -0.3769018
161340 0.43799278
75369 0.14110625
63554 0.27864882

Total number of rows: 58203

Table truncated, full table size 1025 Kbytes.




Supplementary file Size Download File type/resource
GSM2507187_US84300232_253394210002_S01_CGH_107_Sep09_1_4.txt.gz 6.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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