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Sample GSM2507181 Query DataSets for GSM2507181
Status Public on Feb 25, 2017
Title 20mGyGM/ reference male mouse2
Sample type genomic
 
Channel 1
Source name 20mGyGM
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name reference male mouse2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyGM Cy5
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22217
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
35062 0.105049364
32124 0.17628129
19992 0.037343856
111316 0.16192754
22131 -0.053974967
44606 0.020905688
113738 -0.040786218
28916 -0.08579049
96316 -0.019541519
80468 0.34044808
96993 0.2750007
168307 0.39293683
104377 0.2875712
36277 -0.15452377
9574 0.14983265
105499 -0.004494987
82182 0.18004471
161340 0.2316846
75369 0.2389991
63554 0.3273987

Total number of rows: 58203

Table truncated, full table size 1027 Kbytes.




Supplementary file Size Download File type/resource
GSM2507181_US84300232_253394210001_S01_CGH_107_Sep09_1_2.txt.gz 6.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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