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Sample GSM2507180 Query DataSets for GSM2507180
Status Public on Feb 25, 2017
Title reference male mouse2/ 20mGyGM
Sample type genomic
 
Channel 1
Source name reference male mouse2
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy5
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
Channel 2
Source name 20mGyGM
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: tail
Extracted molecule genomic DNA
Extraction protocol PI-50a (Kurabo Industries LTD.) tissue DNA extraction protocol.
Label Cy3
Label protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
 
 
Hybridization protocol Oligonucleotide Array-Based CGH for Genomic DNA Analysis, protocol version 4.0.8
Scan protocol Scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description 20mGyGM Cy3
Data processing Agilent Genomic Workbench Software (v 7.0.) was used.
 
Submission date Feb 24, 2017
Last update date Apr 06, 2017
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Platform ID GPL22217
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3 or Cy3/Cy5) representing test/reference

Data table
ID_REF VALUE
35062 -0.15352815
32124 -0.17354262
19992 0.013646247
111316 -0.13323888
22131 0.16189322
44606 -0.03722583
113738 -0.124234
28916 -0.09102364
96316 -0.097355776
80468 0.31755874
96993 -0.18678945
168307 -0.4472336
104377 0.04105168
36277 0.028965686
9574 -0.11712862
105499 -0.13398963
82182 0.50282425
161340 -0.39613867
75369 -0.06673307
63554 -0.1359277

Total number of rows: 58203

Table truncated, full table size 1023 Kbytes.




Supplementary file Size Download File type/resource
GSM2507180_US84300232_253394210001_S01_CGH_107_Sep09_1_1.txt.gz 6.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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