NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2453417 Query DataSets for GSM2453417
Status Public on Feb 03, 2017
Title polyA mRNA RNA-seq from ovary (ENCLB178YZR)
Sample type SRA
 
Source name Homo sapiens ovary tissue female adult (47 years)
Organism Homo sapiens
Characteristics tissue_type: ovary
biomaterial_type: tissue
biosample encode accession: ENCBS463ZCZ (SAMN06215957)
dev stage: adult
donor_id: ENCDO949QAW
age: 47 year
Sex: female
lab: Michael Snyder, Stanford
link: ENCBS463ZCZ at ENCODE; https://www.encodeproject.org/ENCBS463ZCZ/
link: Derived from ENCODE donor ENCDO949QAW; https://www.encodeproject.org/ENCDO949QAW/
Extracted molecule total RNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/ffef687e-f74d-429e-8799-d16f991bbb11/@@download/attachment/wgEncodeSydhRnaSeq.patch.html.pdf
extraction method: RNeasy Lipid Tissue Mini Kit (QIAGEN cat#74804)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR046XHI/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq in human ovary.
experiment encode accession: ENCSR046XHI
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-12-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB178YZR
size range: 350-450
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jan 11, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE93479 polyA mRNA RNA-seq from ovary (ENCSR046XHI)
Relations
BioSample SAMN06215957
SRA SRX2487479

Supplementary file Size Download File type/resource
GSM2453417_ENCFF350XDJ_minus_strand_signal_of_unique_reads_hg19.bigWig 121.5 Mb (ftp)(http) BIGWIG
GSM2453417_ENCFF479CKA_gene_quantifications_hg19.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2453417_ENCFF485IAK_minus_strand_signal_of_all_reads_GRCh38.bigWig 134.1 Mb (ftp)(http) BIGWIG
GSM2453417_ENCFF565DNB_plus_strand_signal_of_all_reads_GRCh38.bigWig 137.5 Mb (ftp)(http) BIGWIG
GSM2453417_ENCFF646AIJ_minus_strand_signal_of_unique_reads_GRCh38.bigWig 121.6 Mb (ftp)(http) BIGWIG
GSM2453417_ENCFF650IMN_minus_strand_signal_of_all_reads_hg19.bigWig 133.3 Mb (ftp)(http) BIGWIG
GSM2453417_ENCFF729PZU_plus_strand_signal_of_unique_reads_GRCh38.bigWig 125.4 Mb (ftp)(http) BIGWIG
GSM2453417_ENCFF747FVS_transcript_quantifications_hg19.tsv.gz 7.9 Mb (ftp)(http) TSV
GSM2453417_ENCFF798DMP_transcript_quantifications_GRCh38.tsv.gz 8.0 Mb (ftp)(http) TSV
GSM2453417_ENCFF838SNH_plus_strand_signal_of_unique_reads_hg19.bigWig 125.5 Mb (ftp)(http) BIGWIG
GSM2453417_ENCFF857MSA_gene_quantifications_GRCh38.tsv.gz 2.7 Mb (ftp)(http) TSV
GSM2453417_ENCFF902YFD_plus_strand_signal_of_all_reads_hg19.bigWig 136.9 Mb (ftp)(http) BIGWIG
GSM2453417_ENCLB178YZR_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap