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Sample GSM2453411 Query DataSets for GSM2453411
Status Public on Feb 03, 2017
Title polyA mRNA RNA-seq from MEL cell line (ENCLB409VHC)
Sample type SRA
Source name Mus musculus strain MEL MEL immortalized cell line treated with 2% dimethyl sulfoxide for 5 days
Organism Mus musculus
Characteristics line: MEL cell line
biomaterial_type: immortalized cell line
description: Leukemia (K562 analog)
biosample encode accession: ENCBS050ENC (SAMN06044898)
dev stage: unknown
treatments: treatment_term_id: CHEBI:28262; treatment_term_name: dimethyl sulfoxide; treatment_type: chemical; duration: 5; duration_units: day; UCSC-ENCODE-cv:DMSO_2.0pct;
Sex: not collected
age: unknown
health state: unknown
lab: Michael Snyder, Stanford
link: ENCBS050ENC at ENCODE;
link: Derived from ENCODE donor ENCDO073AAA;
link: ENCODE dbxrefs Cellosaurus CVCL_2111;
link: ENCODE dbxrefs MEL;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on mouse erythroleukemia cells treated with dimethylsulfoxide 2.0% (single end)
experiment encode accession: ENCSR000CIE
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-08-13
lab: Ross Hardison, PennState
library encode accession: ENCLB409VHC
size range: >175
Data processing See GSM*_README.txt supplementary file linked below
Submission date Jan 11, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (1)
GSE93476 polyA mRNA RNA-seq from MEL cell line (ENCSR000CIE)
BioSample SAMN06044898
SRA SRX2487469

Supplementary file Size Download File type/resource
GSM2453411_ENCFF343IAQ_signal_of_all_reads_mm10.bigWig 147.6 Mb (ftp)(http) BIGWIG
GSM2453411_ENCFF474KPJ_transcript_quantifications_mm10.tsv.gz 4.8 Mb (ftp)(http) TSV
GSM2453411_ENCFF619TEZ_gene_quantifications_mm10.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2453411_ENCFF691DSC_signal_of_unique_reads_mm10.bigWig 78.5 Mb (ftp)(http) BIGWIG
GSM2453411_ENCLB409VHC_README.txt.gz 610 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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