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GEO accession:
Sample GSM24435
Query DataSets for GSM24435
Status
Public on Jun 11, 2004
Title
C. elegans L4 larvae
Sample type
SAGE
Anchor
NlaIII
Tag Count
131265
Tag Length
10
Source name
L4 larvae (strain N2)
Organism
Caenorhabditis elegans
Extracted molecule
total RNA
Description
Libraries were constructed from total RNA from whole L4 stage larvae (strain N2); 14 bp tags. Tagging enzyme: BsmF1.
Linker sequences and duplicate ditags are excluded.
Keywords = SAGE
Keywords = L4 larvae
Lot batch =
Submission date
May 28, 2004
Last update date
Nov 19, 2008
Contact name
Kim Wong
E-mail(s)
kwong@bcgsc.ca
Phone
604-877-6000 ext.3265
Fax
604-876-3561
Organization name
British Columbia Cancer Agency
Lab
British Columbia Genome Sciences Centre
Street address
600 West 10th Avenue
City
Vancouver
State/province
BC
ZIP/Postal code
V5Z 4E6
Country
Canada
Platform ID
GPL1267
Series (1)
GSE1447
C. elegans SAGE
Data table header descriptions
TAG
10 bp tag sequence;
COUNT
Absolute tag count
TPM
tags per million
Data table
TAG
COUNT
TPM
GAAACTCTTG
5
38.09
GCTTTTGAAA
1
7.62
TAGAGATATT
1
7.62
TCCCACCACA
1
7.62
TCCAATGGTT
1
7.62
ATTTTCGATA
3
22.85
GGCATCAATA
1
7.62
AATAAACCAA
2
15.24
TAATCATCCA
1
7.62
TAATGAAAAA
1
7.62
ATGGACTCCC
1
7.62
ATGTACACCT
1
7.62
GTAAACTTGG
1
7.62
TATGGATGTA
2
15.24
ATTTTCGATG
1
7.62
CTATTCGGAA
7
53.33
AGACGGTTAA
1
7.62
TCAGAAAAGG
1
7.62
CTATGGAATA
1
7.62
GTTCCATATG
1
7.62
Total number of rows:
25699
Table truncated, full table size
465 Kbytes
.
Supplementary data files not provided
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