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Status
Public on Jan 22, 2017
Title
Aire KO Etopo 2
Sample type
RNA
Source name
Thymus
Organism
Mus musculus Characteristics
age: 6 Weeks Old
Extracted molecule
total RNA
Extraction protocol
TriZol
Label
Biotin
Label protocol
Affymetrix GeneChip WT Terminal Labeling and Controls Kit
Hybridization protocol
Ambion WT Expression Kit
Scan protocol
Affymetrix GeneChip Scanner
Data processing
The datasets was pre-filtered to keep only those probesets for which a gene symbol could be found in the Affymetrix annotation. CEL files were normalized using Affymetrix Power Tools on the predefined probeset ID list mentioned above, and using the standard RMA workflow (background adjustment, quantile normalization, median polish probeset summarization). Output on 2^ scale.
Submission date
Dec 16, 2016
Last update date
Jan 22, 2017
Contact name
CBDM Lab
E-mail(s)
cbdm@hms.harvard.edu Phone
617-432-7747
Organization name
Harvard Medical School
Department
Microbiology and Immunobiology
Lab
CBDM
Street address
77 Avenue Louis Pasteur
City
Boston
State/province
MA
ZIP/Postal code
02215
Country
USA
Platform ID
GPL6246 Series (2)
GSE92509 Aire, guardian of immunological tolerance, binds to and activates super-enhancers [expression]
GSE92654 Aire, guardian of immunological tolerance, binds to and activates super-enhancers
Data table header descriptions ID_REF VALUE RMA normalized signal intensity
Data table ID_REF VALUE 10344620
32.4875
10344622
313.741
10344624
1395.6155
10344633
1653.7664
10344637
669.8895
10344653
47.4259
10344658
445.1013
10344674
29.3606
10344679
181.1129
10344707
908.3176
10344713
461.0864
10344723
137.5608
10344725
207.9013
10344741
1248.8344
10344743
70.7417
10344750
1531.8795
10344772
86.1011
10344789
486.7079
10344797
647.9938
10344799
575.5728
24922 433 Kbytes .Supplementary file Size Download File type/resource GSM2430945_EA07068_371484_MOGENE-1_0-ST-V1_MECHI.AIRE.ETOPO_2.CEL.gz
4.4 Mb
(ftp) (http) CEL
Processed data included within Sample table
