|
| Status |
Public on Jan 01, 2018 |
| Title |
Human colon cancer cell line HCT116 was transfected with a control non-targeting siRNA to cells for 36 hours 3 |
| Sample type |
RNA |
| |
|
| Source name |
colon cancer
|
| Organism |
Homo sapiens |
| Characteristics |
agent: control siRNA(100nM)
|
| Treatment protocol |
Cells were grown in DMEM medium (with 2% serum), and was transfected with a control non-targeting siRNA to cells or transfected with siRNA targeting YAP1 for 36 hours.
|
| Growth protocol |
The human colon cancer cell lines HCT116 were cultured in both DMEM medium supplemented with 10% fetal bovine serum, 100 units/m of penicillin and streptomycin. Cultures were incubated at 37°C in a humidified incubator at 5% CO2.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 μg total RNA.
|
| |
|
| Hybridization protocol |
Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45℃ on Affymetrix Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
|
| Scan protocol |
GeneChips were scanned using the GeneChip® Scanner 3000.
|
| Description |
Expression data for human colon cancer cell line HCT116 transfected with siRNA targeting YAP1.
|
| Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
|
| |
|
| Submission date |
Dec 13, 2016 |
| Last update date |
Jan 01, 2018 |
| Contact name |
Jian Ma |
| E-mail(s) |
majian@csu.edu.cn
|
| Organization name |
Central South University
|
| Department |
Cancer Research Institute
|
| Street address |
110 Xiangya Road
|
| City |
Changsha |
| State/province |
Hunan |
| ZIP/Postal code |
410078 |
| Country |
China |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE92335 |
Expression data for human colon cancer cell line HCT116 transfected with siRNA targeting YAP1. |
|
