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Sample GSM2424225 Query DataSets for GSM2424225
Status Public on Jan 04, 2017
Title ChIP-seq from liver (ENCLB188IIF)
Sample type SRA
 
Source name Mus musculus strain B6NCrl liver tissue mixed sex embryo (14.5 days)
Organism Mus musculus
Characteristics antibody: EP300
tissue_type: liver
biomaterial_type: tissue
description: pulverized livers pooled from multiple dissections of embryonic 14.5 day mice
biosample encode accession: ENCBS464EKT (SAMN06122466)
dev stage: embryonic
donor_id: ENCDO956IXV
age: 14.5 day
Sex: pooled male and female
lab: Richard Myers, HAIB
link: ENCBS464EKT at ENCODE; https://www.encodeproject.org/ENCBS464EKT/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR982LJQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on e14.5 liver
experiment encode accession: ENCSR982LJQ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR982SZZ, ENCSR321TTR
encode release date: 2016-05-17
lab: Richard Myers, HAIB
library encode accession: ENCLB188IIF
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Dec 11, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (1)
GSE92206 ChIP-seq from liver (ENCSR982LJQ)
Relations
BioSample SAMN06122466
SRA SRX2424683
Named Annotation GSM2424225_ENCFF845YIG_peaks_mm10.bed.gz
Named Annotation GSM2424225_ENCFF704DPP_fold_change_over_control_mm10.bigWig
Named Annotation GSM2424225_ENCFF205DDI_signal_p-value_mm10.bigWig

Supplementary file Size Download File type/resource
GSM2424225_ENCFF205DDI_signal_p-value_mm10.bigWig 296.4 Mb (ftp)(http) BIGWIG
GSM2424225_ENCFF406NAB_peaks_mm10.bigBed 10.3 Mb (ftp)(http) BIGBED
GSM2424225_ENCFF704DPP_fold_change_over_control_mm10.bigWig 330.6 Mb (ftp)(http) BIGWIG
GSM2424225_ENCFF845YIG_peaks_mm10.bed.gz 4.4 Mb (ftp)(http) BED
GSM2424225_ENCLB188IIF_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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