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Sample GSM2423739 Query DataSets for GSM2423739
Status Public on Jan 04, 2017
Title ChIP-seq from HepG2 (ENCLB955SQO)
Sample type SRA
 
Source name Homo sapiens HepG2 immortalized cell line
Organism Homo sapiens
Characteristics antibody: Control
line: HepG2
biomaterial_type: immortalized cell line
description: Hepatocellular carcinoma
biosample encode accession: ENCBS271FCJ (SAMN06121764)
dev stage: child
Sex: male
age: 15 year
health state: hepatocellular carcinoma
lab: Michael Snyder, Stanford
link: ENCBS271FCJ at ENCODE; https://www.encodeproject.org/ENCBS271FCJ/
link: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/
link: growth protocol; https://www.encodeproject.org/documents/d9ecf994-5e1d-4efd-918e-6a3cb57b4328/@@download/attachment/Snyder_HepG2%20Cell%20Growth%20Protocol.pdf
link: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027
link: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/2abad4f0-cd36-43de-8cd8-9958aa7fde39/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_GAIIx.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Description https://www.encodeproject.org/experiments/ENCSR613TDP/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on human HepG2
experiment encode accession: ENCSR613TDP
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB955SQO
size range: 150-350
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Dec 11, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE91913 ChIP-seq from HepG2 (ENCSR613TDP)
Relations
BioSample SAMN06121764
SRA SRX2424199

Supplementary file Size Download File type/resource
GSM2423739_ENCLB955SQO_README.txt.gz 299 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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