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GEO accession:
Sample GSM2423497
Query DataSets for GSM2423497
Status
Public on Jan 04, 2017
Title
ChIP-seq from stomach (ENCLB618WJC)
Sample type
SRA
Source name
Mus musculus strain B6NCrl stomach tissue postnatal (0 days)
Organism
Mus musculus
Characteristics
antibody: EP300
tissue_type: stomach
biomaterial_type: tissue
biosample encode accession: ENCBS551QZH (SAMN06122469)
dev stage: postnatal
donor_id: ENCDO956IXV
age: 0 day
Sex: not collected
lab: Richard Myers, HAIB
link: ENCBS551QZH at ENCODE;
https://www.encodeproject.org/ENCBS551QZH/
link: Derived from ENCODE donor ENCDO956IXV;
https://www.encodeproject.org/ENCDO956IXV/
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf
general protocol:
https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR450KVW/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on P0 stomach
experiment encode accession: ENCSR450KVW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR993MMD, ENCSR281FZS
encode release date: 2016-05-17
lab: Richard Myers, HAIB
library encode accession: ENCLB618WJC
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 11, 2016
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL13112
Series (1)
GSE91770
ChIP-seq from stomach (ENCSR450KVW)
Relations
BioSample
SAMN06122469
SRA
SRX2423943
Named Annotation
GSM2423497_ENCFF477NPU_peaks_mm10.bed.gz
Named Annotation
GSM2423497_ENCFF132XVI_fold_change_over_control_mm10.bigWig
Named Annotation
GSM2423497_ENCFF224EQW_signal_p-value_mm10.bigWig
Supplementary file
Size
Download
File type/resource
GSM2423497_ENCFF009IYR_peaks_mm10.bigBed
12.6 Mb
(ftp)
(http)
BIGBED
GSM2423497_ENCFF132XVI_fold_change_over_control_mm10.bigWig
589.5 Mb
(ftp)
(http)
BIGWIG
GSM2423497_ENCFF224EQW_signal_p-value_mm10.bigWig
608.8 Mb
(ftp)
(http)
BIGWIG
GSM2423497_ENCFF477NPU_peaks_mm10.bed.gz
6.0 Mb
(ftp)
(http)
BED
GSM2423497_ENCLB618WJC_README.txt.gz
1.2 Kb
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file
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