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Sample GSM2407438 Query DataSets for GSM2407438
Status Public on Nov 25, 2017
Title MD10
Sample type RNA
 
Source name tumor
Organism Homo sapiens
Characteristics disease state: NKTL
preparation: FFPE
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
 
Hybridization protocol Hybridization was performed according to NuGEN specifications.
Scan protocol Scanning was performed on a GeneChip Scanner 3000.
Data processing Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
 
Submission date Nov 28, 2016
Last update date Nov 25, 2017
Contact name Siok-Bian Ng
E-mail(s) patnsb@nus.edu.sg
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL10739
Series (2)
GSE90597 Molecular heterogeneity of NK/T-cell lymphoma (expression)
GSE90784 Molecular heterogeneity of NK/T-cell lymphoma

Data table header descriptions
ID_REF
VALUE log2-expression intensity

Data table
ID_REF VALUE
7892501 5.281561029
7892502 4.045178347
7892503 7.587220657
7892504 11.97182103
7892505 3.873253867
7892506 6.588326746
7892507 8.367936584
7892508 5.359707955
7892509 4.899423007
7892510 3.604120734
7892511 3.828387671
7892512 7.519942167
7892513 5.865284872
7892514 11.38187524
7892515 11.44050328
7892516 3.487053764
7892517 5.48137947
7892518 5.507581588
7892519 6.215731663
7892520 11.89966523

Total number of rows: 257430

Table truncated, full table size 4998 Kbytes.




Supplementary file Size Download File type/resource
GSM2407438_MD10.CEL.gz 2.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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