|
| Status |
Public on Nov 25, 2017 |
| Title |
MD01 |
| Sample type |
RNA |
| |
|
| Source name |
tumor
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: NKTL
preparation: FFPE
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
|
| |
|
| Hybridization protocol |
Hybridization was performed according to NuGEN specifications.
|
| Scan protocol |
Scanning was performed on a GeneChip Scanner 3000.
|
| Data processing |
Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
|
| |
|
| Submission date |
Nov 28, 2016 |
| Last update date |
Nov 25, 2017 |
| Contact name |
Siok-Bian Ng |
| E-mail(s) |
patnsb@nus.edu.sg
|
| Organization name |
National University Health System, Singapore
|
| Department |
Department of Pathology
|
| Street address |
National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
|
| City |
Singapore |
| ZIP/Postal code |
119074 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL10739 |
| Series (2) |
| GSE90597 |
Molecular heterogeneity of NK/T-cell lymphoma (expression) |
| GSE90784 |
Molecular heterogeneity of NK/T-cell lymphoma |
|
