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GEO accession:
Sample GSM2400525
Query DataSets for GSM2400525
Status
Public on Dec 07, 2016
Title
DNase-seq from adipocyte (ENCLB141LOR)
Sample type
SRA
Source name
Mus musculus strain C57BL/6J adipocyte in vitro differentiated cells
Organism
Mus musculus
Characteristics
cell_type: adipocyte
biomaterial_type: in vitro differentiated cells
description: Differentiated from 3T3-L1 (Day 8)
biosample encode accession: ENCBS937WUO (SAMN06044927)
dev stage: unknown
Sex: not collected
donor_id: ENCDO072AAA
age: unknown
lab: John Stamatoyannopoulos, UW
link: ENCBS937WUO at ENCODE;
https://www.encodeproject.org/ENCBS937WUO/
link: Derived from ENCODE donor ENCDO072AAA;
https://www.encodeproject.org/ENCDO072AAA/
Extracted molecule
genomic DNA
Extraction protocol
other:
https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina HiSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR998KYQ/
***************
biological replicate number: 1
technical replicate number: 2,1
description:
experiment encode accession: ENCSR998KYQ
assay title: DNase-seq
assembly: mm10
encode release date: 2016-11-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB141LOR
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Nov 22, 2016
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL13112
Series (1)
GSE90439
DNase-seq from adipocyte (ENCSR998KYQ)
Relations
BioSample
SAMN06044927
SRA
SRX2370827
Named Annotation
GSM2400525_ENCFF961DCA_hotspots_mm10.bed.gz
Named Annotation
GSM2400525_ENCFF617WHP_signal_of_unique_reads_mm10.bigWig
Named Annotation
GSM2400525_ENCFF527BCN_peaks_mm10.bed.gz
Supplementary file
Size
Download
File type/resource
GSM2400525_ENCFF120BAL_peaks_mm10.bigBed
1.8 Mb
(ftp)
(http)
BIGBED
GSM2400525_ENCFF276QMY_hotspots_mm10.bigBed
2.4 Mb
(ftp)
(http)
BIGBED
GSM2400525_ENCFF527BCN_peaks_mm10.bed.gz
1.2 Mb
(ftp)
(http)
BED
GSM2400525_ENCFF617WHP_signal_of_unique_reads_mm10.bigWig
551.3 Mb
(ftp)
(http)
BIGWIG
GSM2400525_ENCFF961DCA_hotspots_mm10.bed.gz
1.5 Mb
(ftp)
(http)
BED
GSM2400525_ENCLB141LOR_README.txt.gz
716 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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