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Sample GSM2400249 Query DataSets for GSM2400249
Status Public on Dec 07, 2016
Title total RNA-seq from ES-E14 (ENCLB212CDP)
Sample type SRA
 
Source name Mus musculus strain 129/Ola ES-E14 stem cell male embryo
Organism Mus musculus
Characteristics cell_type: ES-E14
biomaterial_type: stem cell
description: mouse embryonic stem cell line E14
biosample encode accession: ENCBS043ENC (SAMN06044896)
dev stage: embryonic
Sex: male
donor_id: ENCDO015AAA
age: unknown
health state: unknown
lab: Michael Snyder, Stanford
link: ENCBS043ENC at ENCODE; https://www.encodeproject.org/ENCBS043ENC/
link: Derived from ENCODE donor ENCDO015AAA; https://www.encodeproject.org/ENCDO015AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_C320; http://web.expasy.org/cellosaurus/CVCL_C320
link: ENCODE dbxrefs ES-E14; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=ES-E14
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/6f6a5d8c-0b06-4457-bfbb-ee4944eab1d6/@@download/attachment/wgEncodeSydhRnaSeq.release2.html.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR000CWC/
***************
biological replicate number: 1
technical replicate number: 1
description: Stanford mouse ES-E14 RNA-seq
experiment encode accession: ENCSR000CWC
assay title: total RNA-seq
assembly: mm10
encode release date: 2012-06-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB212CDP
size range: 300-350
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (1)
GSE90277 total RNA-seq from ES-E14 (ENCSR000CWC)
Relations
BioSample SAMN06044896
SRA SRX2370565
Named Annotation GSM2400249_ENCFF534PSE_plus_strand_signal_of_unique_reads_mm10.bigWig
Named Annotation GSM2400249_ENCFF844WTF_minus_strand_signal_of_all_reads_mm10.bigWig
Named Annotation GSM2400249_ENCFF188NRZ_plus_strand_signal_of_all_reads_mm10.bigWig
Named Annotation GSM2400249_ENCFF193EZG_minus_strand_signal_of_unique_reads_mm10.bigWig

Supplementary file Size Download File type/resource
GSM2400249_ENCFF001NDJ_signal_mm9.tar.gz 395.3 Mb (ftp)(http) TAR
GSM2400249_ENCFF188NRZ_plus_strand_signal_of_all_reads_mm10.bigWig 286.3 Mb (ftp)(http) BIGWIG
GSM2400249_ENCFF193EZG_minus_strand_signal_of_unique_reads_mm10.bigWig 220.8 Mb (ftp)(http) BIGWIG
GSM2400249_ENCFF243VGH_gene_quantifications_mm10.tsv.gz 2.0 Mb (ftp)(http) TSV
GSM2400249_ENCFF534PSE_plus_strand_signal_of_unique_reads_mm10.bigWig 225.6 Mb (ftp)(http) BIGWIG
GSM2400249_ENCFF735AHL_transcript_quantifications_mm10.tsv.gz 4.4 Mb (ftp)(http) TSV
GSM2400249_ENCFF844WTF_minus_strand_signal_of_all_reads_mm10.bigWig 279.7 Mb (ftp)(http) BIGWIG
GSM2400249_ENCLB212CDP_README.txt.gz 849 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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