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Sample GSM2400240 Query DataSets for GSM2400240
Status Public on Dec 07, 2016
Title polyA mRNA RNA-seq from CD14-positive monocyte (ENCLB555AWY)
Sample type SRA
Source name Homo sapiens CD14-positive monocyte primary cell female
Organism Homo sapiens
Characteristics cell_type: CD14-positive monocyte
biomaterial_type: primary cell
description: Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis
biosample encode accession: ENCBS626ENC (SAMN06044634)
dev stage: unknown
Sex: female
donor_id: ENCDO265AAA
age: unknown
health state: unknown
lab: Thomas Gingeras, CSHL
link: ENCBS626ENC at ENCODE;
link: Derived from ENCODE donor ENCDO265AAA;
link: ENCODE dbxrefs Monocytes-CD14+_RO01746;
link: Heimfeld sample source;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from the whole cell fraction of independent isolates of mobilized CD14+ monocytes. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUC
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AWY
size range: >200
spikeins used: /references/ENCSR402QNO/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (1)
GSE90272 polyA mRNA RNA-seq from CD14-positive monocyte (ENCSR000CUC)
BioSample SAMN06044634
SRA SRX2370556
Named Annotation GSM2400240_ENCFF724GUM_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2400240_ENCFF676HVY_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2400240_ENCFF336UAC_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2400240_ENCFF902LWD_plus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2400240_ENCFF005IVU_plus_strand_signal_of_unique_reads_hg19.bigWig 100.2 Mb (ftp)(http) BIGWIG
GSM2400240_ENCFF256KUG_minus_strand_signal_of_all_reads_hg19.bigWig 104.4 Mb (ftp)(http) BIGWIG
GSM2400240_ENCFF336UAC_minus_strand_signal_of_unique_reads_GRCh38.bigWig 96.4 Mb (ftp)(http) BIGWIG
GSM2400240_ENCFF397DFK_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2400240_ENCFF400ACO_minus_strand_signal_of_unique_reads_hg19.bigWig 95.8 Mb (ftp)(http) BIGWIG
GSM2400240_ENCFF669GZO_gene_quantifications_hg19.tsv.gz 2.4 Mb (ftp)(http) TSV
GSM2400240_ENCFF676HVY_plus_strand_signal_of_unique_reads_GRCh38.bigWig 100.4 Mb (ftp)(http) BIGWIG
GSM2400240_ENCFF697ZVB_transcript_quantifications_hg19.tsv.gz 7.5 Mb (ftp)(http) TSV
GSM2400240_ENCFF724GUM_minus_strand_signal_of_all_reads_GRCh38.bigWig 105.7 Mb (ftp)(http) BIGWIG
GSM2400240_ENCFF780XKG_transcript_quantifications_GRCh38.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2400240_ENCFF790QBJ_plus_strand_signal_of_all_reads_hg19.bigWig 108.1 Mb (ftp)(http) BIGWIG
GSM2400240_ENCFF902LWD_plus_strand_signal_of_all_reads_GRCh38.bigWig 109.2 Mb (ftp)(http) BIGWIG
GSM2400240_ENCLB555AWY_README.txt.gz 1.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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