GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2400152 Query DataSets for GSM2400152
Status Public on Dec 07, 2016
Title polyA mRNA RNA-seq from H1-hESC (ENCLB555AMA)
Sample type SRA
Source name Homo sapiens H1-hESC stem cell male embryo
Organism Homo sapiens
Characteristics cell_type: H1-hESC
biomaterial_type: stem cell
description: embryonic stem cells
biosample encode accession: ENCBS731AAA (SAMN06044728)
dev stage: embryonic
Sex: male
donor_id: ENCDO000AAW
age: unknown
health state: healthy
lab: Thomas Gingeras, CSHL
link: ENCBS731AAA at ENCODE;
link: Derived from ENCODE donor ENCDO000AAW;
link: ENCODE dbxrefs Cellosaurus CVCL_9771;
link: ENCODE dbxrefs H1-hESC;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from the whole cell fraction of independent growths of the human embryonic stem cell line H1-hESC. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000COU
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2011-10-17
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AMA
size range: >200
spikeins used: /references/ENCSR402QNO/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (1)
GSE90225 polyA mRNA RNA-seq from H1-hESC (ENCSR000COU)
BioSample SAMN06044728
SRA SRX2370468
Named Annotation GSM2400152_ENCFF485AOP_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2400152_ENCFF090ABV_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2400152_ENCFF142LNT_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2400152_ENCFF801APS_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2400152_ENCFF045NOY_gene_quantifications_hg19.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2400152_ENCFF090ABV_minus_strand_signal_of_all_reads_GRCh38.bigWig 195.3 Mb (ftp)(http) BIGWIG
GSM2400152_ENCFF142LNT_plus_strand_signal_of_all_reads_GRCh38.bigWig 204.5 Mb (ftp)(http) BIGWIG
GSM2400152_ENCFF354QYX_plus_strand_signal_of_unique_reads_hg19.bigWig 183.9 Mb (ftp)(http) BIGWIG
GSM2400152_ENCFF359YHK_minus_strand_signal_of_all_reads_hg19.bigWig 194.8 Mb (ftp)(http) BIGWIG
GSM2400152_ENCFF479AZO_transcript_quantifications_GRCh38.tsv.gz 8.1 Mb (ftp)(http) TSV
GSM2400152_ENCFF485AOP_plus_strand_signal_of_unique_reads_GRCh38.bigWig 183.8 Mb (ftp)(http) BIGWIG
GSM2400152_ENCFF653XHG_gene_quantifications_GRCh38.tsv.gz 2.7 Mb (ftp)(http) TSV
GSM2400152_ENCFF662GOU_transcript_quantifications_hg19.tsv.gz 7.9 Mb (ftp)(http) TSV
GSM2400152_ENCFF713JAG_minus_strand_signal_of_unique_reads_hg19.bigWig 173.7 Mb (ftp)(http) BIGWIG
GSM2400152_ENCFF801APS_minus_strand_signal_of_unique_reads_GRCh38.bigWig 173.9 Mb (ftp)(http) BIGWIG
GSM2400152_ENCFF824LWJ_plus_strand_signal_of_all_reads_hg19.bigWig 203.5 Mb (ftp)(http) BIGWIG
GSM2400152_ENCLB555AMA_README.txt.gz 1.9 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data is available on Series record
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap