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Sample GSM238921 Query DataSets for GSM238921
Status Public on Jan 29, 2008
Title Oligodendroglioma-Od 25
Sample type RNA
 
Source name glioma
Organism Homo sapiens
Characteristics male, 51y, LOH 1p 19q
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA, purification on RNeasy mini columns (Qiagen)
Label biotin
Label protocol labelling was performed according to the Affymetrix (Santa Clara, CA) GeneChip Whole Transcript (WT) Sense Target Labelling Assay manual
 
Hybridization protocol microarrays were hybridized overnight with 5 g biotin labelled ss-cDNA, and washed in fluidics station wash protocol: MES_EukGE-WS2v5_450
Scan protocol Genechip scanner 3000 7G
Description examination of differentially regulated splice variants and novel exons in glial brain tumors
Data processing GCOS, data extraction in ExACT. Plier data is provided in sample table.
 
Submission date Oct 19, 2007
Last update date Aug 14, 2011
Contact name Pim French
E-mail(s) p.french@erasmusmc.nl
Phone +31 10 70443 33
Organization name Erasmus MC
Department Neurology
Lab Neurooncology
Street address Dr Molewaterplein 50
City Rotterdam
ZIP/Postal code 2040CA
Country Netherlands
 
Platform ID GPL5188
Series (1)
GSE9385 Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon arrays

Data table header descriptions
ID_REF
VALUE plier data

Data table
ID_REF VALUE
2590411 37
2609210 0
2616957 117
2391254 4
3499280 0
2807653 4
2532280 20
3842613 38
3871433 57
3087946 10
3234450 3
3452435 27
2580386 19
3949778 123
2689727 84
2846401 67
2385421 19
2992747 18
3432063 89
2827457 19

Total number of rows: 1411354

Table truncated, full table size 14957 Kbytes.




Supplementary file Size Download File type/resource
GSM238921.CEL.gz 21.9 Mb (ftp)(http) CEL
Processed data provided as supplementary file

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