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GEO accession:
Sample GSM238904
Query DataSets for GSM238904
Status
Public on Jan 29, 2008
Title
Glioblastoma-Gbm 60
Sample type
RNA
Source name
glioma
Organism
Homo sapiens
Characteristics
male, 38y
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA, purification on RNeasy mini columns (Qiagen)
Label
biotin
Label protocol
labelling was performed according to the Affymetrix (Santa Clara, CA) GeneChip Whole Transcript (WT) Sense Target Labelling Assay manual
Hybridization protocol
microarrays were hybridized overnight with 5 g biotin labelled ss-cDNA, and washed in fluidics station wash protocol: MES_EukGE-WS2v5_450
Scan protocol
Genechip scanner 3000 7G
Description
examination of differentially regulated splice variants and novel exons in glial brain tumors
Data processing
GCOS, data extraction in ExACT. Plier data is provided in sample table.
Submission date
Oct 19, 2007
Last update date
Aug 14, 2011
Contact name
Pim French
E-mail(s)
p.french@erasmusmc.nl
Phone
+31 10 70443 33
Organization name
Erasmus MC
Department
Neurology
Lab
Neurooncology
Street address
Dr Molewaterplein 50
City
Rotterdam
ZIP/Postal code
2040CA
Country
Netherlands
Platform ID
GPL5188
Series (1)
GSE9385
Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon arrays
Data table header descriptions
ID_REF
VALUE
plier data
Data table
ID_REF
VALUE
2590411
7
2609210
11
2616957
45
2391254
13
3499280
1
2807653
0
2532280
37
3842613
3
3871433
40
3087946
10
3234450
9
3452435
76
2580386
2
3949778
112
2689727
0
2846401
109
2385421
24
2992747
7
3432063
26
2827457
26
Total number of rows:
1411354
Table truncated, full table size
14885 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238904.CEL.gz
21.6 Mb
(ftp)
(http)
CEL
Processed data provided as supplementary file
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