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GEO accession:
Sample GSM238808
Query DataSets for GSM238808
Status
Public on Oct 23, 2007
Title
HIP_affected_10
Sample type
RNA
Source name
brain, Hippocampus
Organism
Homo sapiens
Characteristics
sample amount: 10 ng
bio-source name: HIP_affected_10
organism: Human
organ/tissue type: brain
organ region: hippocampus
cell type: layer III neurons
ethnicity: Caucasian
developmental stage: Adult
disease state: Alzheimer's Disease
sex: male
genetic variation: None
age: 78 years
Extracted molecule
total RNA
Extraction protocol
Arcturus PicoPure
Label
biotin
Label protocol
Affymetrix double-round expression profiling
Hybridization protocol
Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol
Affymetrix GCOS
Description
arrayconsortium.tgen.org::biosample.568613
cortical layer III neurons
Data processing
MAS5.0; target scaling to 150
Submission date
Oct 19, 2007
Last update date
Jun 26, 2019
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL570
Series (1)
GSE5281
Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Reanalyzed by
GSE133349
Data table header descriptions
ID_REF
VALUE
expression signal
ABS_CALL
absent/marginal/present
DETECTION P-VALUE
significance of absent/marginal/absent call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1127.33
P
6.02111e-05
AFFX-BioB-M_at
1466.29
P
4.42873e-05
AFFX-BioB-3_at
1018.47
P
4.42873e-05
AFFX-BioC-5_at
3088.7
P
4.42873e-05
AFFX-BioC-3_at
3722.88
P
4.42873e-05
AFFX-BioDn-5_at
7794.89
P
4.42873e-05
AFFX-BioDn-3_at
13761.6
P
4.42873e-05
AFFX-CreX-5_at
28494.5
P
5.16732e-05
AFFX-CreX-3_at
37142.1
P
4.42873e-05
AFFX-DapX-5_at
1836.26
P
4.42873e-05
AFFX-DapX-M_at
8815.01
P
4.42873e-05
AFFX-DapX-3_at
26888.2
P
4.42873e-05
AFFX-LysX-5_at
290.442
P
5.16732e-05
AFFX-LysX-M_at
2069.99
P
5.16732e-05
AFFX-LysX-3_at
7029.94
P
4.42873e-05
AFFX-PheX-5_at
650.012
P
5.16732e-05
AFFX-PheX-M_at
3019.65
P
4.42873e-05
AFFX-PheX-3_at
5552.47
P
4.42873e-05
AFFX-ThrX-5_at
591.067
P
5.16732e-05
AFFX-ThrX-M_at
2937.89
P
4.42873e-05
Total number of rows:
54675
Table truncated, full table size
1619 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238808.CEL.gz
4.0 Mb
(ftp)
(http)
CEL
GSM238808.CHP.gz
307.9 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
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