|
| Status |
Public on Oct 01, 2019 |
| Title |
CHC934N (normal liver) |
| Sample type |
RNA |
| |
|
| Source name |
Non tumor liver
|
| Organism |
Homo sapiens |
| Characteristics |
patient id: #934
tissue: Non tumor liver
disease state: Non tumor liver
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA samples were extracted from frozen tissues, in accordance with standard procedures, as previously described [Rebouissou et al. J Biol Chem 2007]
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
|
| Description |
Gene expression data from hepatocellular carcinoma using Affy U133plus v2
JZN_0934N_U133_2
|
| Data processing |
Raw data were obtained by using Microarray Suite 5.0 (MAS5) software, embedded in the Affymetrix GeneChip Operating Software (Santa Clara, USA). Background subtraction, normalization and expression summaries for every probe set were calculated with the log-scale robust multi-array analysis (RMA) algorithm.
|
| |
|
| Submission date |
Oct 17, 2016 |
| Last update date |
Oct 01, 2019 |
| Contact name |
Sandrine Imbeaud |
| E-mail(s) |
sandrine.imbeaud@inserm.fr
|
| Organization name |
Centre de Recherche des Cordeliers
|
| Department |
INSERM UMRS1138-EQUIPE 28, Sorbonne Université-Inserm-Université de Paris
|
| Lab |
FUNctional GEnomics of Solid Tumors - FunGeST
|
| Street address |
15 rue de l'Ecole de Médecine
|
| City |
Paris |
| ZIP/Postal code |
75006 |
| Country |
France |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE88839 |
Large-scale gene expression profiling of hepatocellular adenomas |
|
