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Sample GSM2344260 Query DataSets for GSM2344260
Status Public on Nov 08, 2016
Title total RNA-seq from hepatocyte (ENCLB816UYB)
Sample type SRA
Source name Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9
Organism Homo sapiens
Characteristics cell_type: hepatocyte
biomaterial_type: in vitro differentiated cells
description: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia
biosample encode accession: ENCBS077RUJ (SAMN04284314)
age: 5 day
donor_id: ENCDO222AAA
dev stage: embryonic
Sex: female
health state: healthy
lab: Richard Myers, HAIB
link: ENCBS077RUJ at ENCODE;
link: Derived from ENCODE donor ENCDO222AAA;
link: differentiation protocol;
Extracted molecule total RNA
Extraction protocol extraction method: Ambion mirVana
extraction protocol:, extraction protocol:, extraction protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 2
technical replicate number: 1
description: hepatocyte
experiment encode accession: ENCSR859HWB
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB816UYB
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 0.350
nucleic acid starting quantity units: ng
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88601 total RNA-seq from hepatocyte (ENCSR859HWB)
BioSample SAMN04284314
SRA SRX2244659
Named Annotation GSM2344260_ENCFF275VBE_signal_of_all_reads_hg19.bigWig
Named Annotation GSM2344260_ENCFF656TLG_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344260_ENCFF501GEF_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344260_ENCFF108UQP_signal_of_unique_reads_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2344260_ENCFF108UQP_signal_of_unique_reads_hg19.bigWig 181.7 Mb (ftp)(http) BIGWIG
GSM2344260_ENCFF122SAC_transcript_quantifications_GRCh38.tsv.gz 8.2 Mb (ftp)(http) TSV
GSM2344260_ENCFF275VBE_signal_of_all_reads_hg19.bigWig 203.7 Mb (ftp)(http) BIGWIG
GSM2344260_ENCFF407VLB_gene_quantifications_GRCh38.tsv.gz 2.8 Mb (ftp)(http) TSV
GSM2344260_ENCFF407XTM_transcript_quantifications_hg19.tsv.gz 8.1 Mb (ftp)(http) TSV
GSM2344260_ENCFF501GEF_signal_of_all_reads_GRCh38.bigWig 204.3 Mb (ftp)(http) BIGWIG
GSM2344260_ENCFF624LQL_gene_quantifications_hg19.tsv.gz 2.7 Mb (ftp)(http) TSV
GSM2344260_ENCFF656TLG_signal_of_unique_reads_GRCh38.bigWig 182.1 Mb (ftp)(http) BIGWIG
GSM2344260_ENCLB816UYB_README.txt.gz 926 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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