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Sample GSM2344222 Query DataSets for GSM2344222
Status Public on Nov 08, 2016
Title total RNA-seq from thoracic aorta (ENCLB351PPD)
Sample type SRA
Source name Homo sapiens thoracic aorta tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: thoracic aorta
biomaterial_type: tissue
description: Aorta tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS560HZX (SAMN05897316)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS560HZX at ENCODE;
link: Derived from ENCODE donor ENCDO451RUA;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's aorta tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR837ZLY
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB351PPD
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE88577 total RNA-seq from thoracic aorta (ENCSR837ZLY)
BioSample SAMN05897316
SRA SRX2244623
Named Annotation GSM2344222_ENCFF322IZM_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344222_ENCFF321ZMK_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344222_ENCFF970BLF_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344222_ENCFF710HMB_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344222_ENCFF127YOW_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344222_ENCFF207WIQ_plus_strand_signal_of_all_reads_hg19.bigWig 91.6 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF242DFL_plus_strand_signal_of_unique_reads_hg19.bigWig 86.7 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF315EWM_minus_strand_signal_of_unique_reads_hg19.bigWig 79.0 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF321ZMK_plus_strand_signal_of_all_reads_GRCh38.bigWig 92.1 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF322IZM_minus_strand_signal_of_all_reads_GRCh38.bigWig 85.8 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF586EAN_transcript_quantifications_hg19.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2344222_ENCFF597PFE_minus_strand_signal_of_all_reads_hg19.bigWig 85.3 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF710HMB_minus_strand_signal_of_unique_reads_GRCh38.bigWig 79.1 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF866FEY_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344222_ENCFF922VKR_transcript_quantifications_GRCh38.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344222_ENCFF970BLF_plus_strand_signal_of_unique_reads_GRCh38.bigWig 86.7 Mb (ftp)(http) BIGWIG
GSM2344222_ENCLB351PPD_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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