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Sample GSM2344222 Query DataSets for GSM2344222
Status Public on Nov 08, 2016
Title total RNA-seq from thoracic aorta (ENCLB351PPD)
Sample type SRA
 
Source name Homo sapiens thoracic aorta tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: thoracic aorta
biomaterial_type: tissue
description: Aorta tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS560HZX (SAMN05897316)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS560HZX at ENCODE; https://www.encodeproject.org/ENCBS560HZX/
link: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/6564df36-ad2a-4f25-9d76-e72d7cee575d/@@download/attachment/295918.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR837ZLY/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's aorta tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR837ZLY
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB351PPD
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE88577 total RNA-seq from thoracic aorta (ENCSR837ZLY)
Relations
BioSample SAMN05897316
SRA SRX2244623
Named Annotation GSM2344222_ENCFF322IZM_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344222_ENCFF321ZMK_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344222_ENCFF970BLF_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344222_ENCFF710HMB_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344222_ENCFF127YOW_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344222_ENCFF207WIQ_plus_strand_signal_of_all_reads_hg19.bigWig 91.6 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF242DFL_plus_strand_signal_of_unique_reads_hg19.bigWig 86.7 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF315EWM_minus_strand_signal_of_unique_reads_hg19.bigWig 79.0 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF321ZMK_plus_strand_signal_of_all_reads_GRCh38.bigWig 92.1 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF322IZM_minus_strand_signal_of_all_reads_GRCh38.bigWig 85.8 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF586EAN_transcript_quantifications_hg19.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2344222_ENCFF597PFE_minus_strand_signal_of_all_reads_hg19.bigWig 85.3 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF710HMB_minus_strand_signal_of_unique_reads_GRCh38.bigWig 79.1 Mb (ftp)(http) BIGWIG
GSM2344222_ENCFF866FEY_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344222_ENCFF922VKR_transcript_quantifications_GRCh38.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344222_ENCFF970BLF_plus_strand_signal_of_unique_reads_GRCh38.bigWig 86.7 Mb (ftp)(http) BIGWIG
GSM2344222_ENCLB351PPD_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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