GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2344180 Query DataSets for GSM2344180
Status Public on Nov 08, 2016
Title total RNA-seq from embryonic facial prominence (ENCLB247JXW)
Sample type SRA
Source name Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (10.5 days)
Organism Mus musculus
Characteristics tissue_type: embryonic facial prominence
biomaterial_type: tissue
description: Craniofacial prominence from 51 embryonic 10.5 day mice
biosample encode accession: ENCBS199YOQ (SAMN05733890)
age: 10.5 day
dev stage: embryonic
donor_id: ENCDO956IXV
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS199YOQ at ENCODE;
link: Derived from ENCODE donor ENCDO956IXV;
Extracted molecule total RNA
Extraction protocol extraction method: Ambion mirVana
extraction protocol:, extraction protocol:, extraction protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 2
technical replicate number: 1
description: Total RNA-seq on 10ng of embryonic 10.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR809VYL
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-08-11
lab: Barbara Wold, Caltech
library encode accession: ENCLB247JXW
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL17021
Series (1)
GSE88554 total RNA-seq from embryonic facial prominence (ENCSR809VYL)
BioSample SAMN05733890
SRA SRX2244578
Named Annotation GSM2344180_ENCFF830BLT_signal_of_unique_reads_mm10.bigWig
Named Annotation GSM2344180_ENCFF593YMR_signal_of_all_reads_mm10.bigWig

Supplementary file Size Download File type/resource
GSM2344180_ENCFF535QTR_transcript_quantifications_mm10.tsv.gz 4.5 Mb (ftp)(http) TSV
GSM2344180_ENCFF593YMR_signal_of_all_reads_mm10.bigWig 202.6 Mb (ftp)(http) BIGWIG
GSM2344180_ENCFF672DDJ_gene_quantifications_mm10.tsv.gz 2.1 Mb (ftp)(http) TSV
GSM2344180_ENCFF830BLT_signal_of_unique_reads_mm10.bigWig 173.4 Mb (ftp)(http) BIGWIG
GSM2344180_ENCLB247JXW_README.txt.gz 655 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap