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Sample GSM2344171 Query DataSets for GSM2344171
Status Public on Nov 08, 2016
Title total RNA-seq from Peyer's patch (ENCLB272RXA)
Sample type SRA
Source name Homo sapiens Peyer's patch tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: Peyer's patch
biomaterial_type: tissue
description: Small intestine aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS024TYX (SAMN05896791)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS024TYX at ENCODE;
link: Derived from ENCODE donor ENCDO845WKR;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's small intestine tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR802HPM
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-05-03
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB272RXA
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88549 total RNA-seq from Peyer's patch (ENCSR802HPM)
BioSample SAMN05896791
SRA SRX2244566
Named Annotation GSM2344171_ENCFF102VMO_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344171_ENCFF925VKS_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344171_ENCFF722DEX_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344171_ENCFF398GUP_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344171_ENCFF102VMO_plus_strand_signal_of_all_reads_GRCh38.bigWig 120.2 Mb (ftp)(http) BIGWIG
GSM2344171_ENCFF129CWI_plus_strand_signal_of_unique_reads_hg19.bigWig 110.0 Mb (ftp)(http) BIGWIG
GSM2344171_ENCFF187NLN_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344171_ENCFF210XSV_transcript_quantifications_hg19.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2344171_ENCFF301NUC_plus_strand_signal_of_all_reads_hg19.bigWig 119.2 Mb (ftp)(http) BIGWIG
GSM2344171_ENCFF398GUP_minus_strand_signal_of_unique_reads_GRCh38.bigWig 102.5 Mb (ftp)(http) BIGWIG
GSM2344171_ENCFF488GDA_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344171_ENCFF609FNP_minus_strand_signal_of_all_reads_hg19.bigWig 111.0 Mb (ftp)(http) BIGWIG
GSM2344171_ENCFF618HHQ_minus_strand_signal_of_unique_reads_hg19.bigWig 103.2 Mb (ftp)(http) BIGWIG
GSM2344171_ENCFF722DEX_minus_strand_signal_of_all_reads_GRCh38.bigWig 111.9 Mb (ftp)(http) BIGWIG
GSM2344171_ENCFF826JMA_transcript_quantifications_GRCh38.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344171_ENCFF925VKS_plus_strand_signal_of_unique_reads_GRCh38.bigWig 109.2 Mb (ftp)(http) BIGWIG
GSM2344171_ENCLB272RXA_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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