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Sample GSM2344169 Query DataSets for GSM2344169
Status Public on Nov 08, 2016
Title total RNA-seq from transverse colon (ENCLB214XDA)
Sample type SRA
Source name Homo sapiens transverse colon tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: transverse colon
biomaterial_type: tissue
description: Transverse colon tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS974EYF (SAMN05897761)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Thomas Gingeras, CSHL
link: ENCBS974EYF at ENCODE;
link: Derived from ENCODE donor ENCDO793LXB;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections from the transverse colon obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR800WIY
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB214XDA
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88547 total RNA-seq from transverse colon (ENCSR800WIY)
BioSample SAMN05897761
SRA SRX2244577
Named Annotation GSM2344169_ENCFF572PVD_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344169_ENCFF351UZL_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344169_ENCFF982XQC_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344169_ENCFF656MVW_plus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344169_ENCFF165WEQ_minus_strand_signal_of_unique_reads_hg19.bigWig 187.0 Mb (ftp)(http) BIGWIG
GSM2344169_ENCFF251BAY_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2344169_ENCFF332OML_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344169_ENCFF351UZL_minus_strand_signal_of_unique_reads_GRCh38.bigWig 186.3 Mb (ftp)(http) BIGWIG
GSM2344169_ENCFF418PXG_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344169_ENCFF460HGY_plus_strand_signal_of_unique_reads_hg19.bigWig 194.3 Mb (ftp)(http) BIGWIG
GSM2344169_ENCFF572PVD_minus_strand_signal_of_all_reads_GRCh38.bigWig 200.2 Mb (ftp)(http) BIGWIG
GSM2344169_ENCFF630RAI_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344169_ENCFF656MVW_plus_strand_signal_of_unique_reads_GRCh38.bigWig 193.3 Mb (ftp)(http) BIGWIG
GSM2344169_ENCFF678HXS_minus_strand_signal_of_all_reads_hg19.bigWig 198.0 Mb (ftp)(http) BIGWIG
GSM2344169_ENCFF937YXR_plus_strand_signal_of_all_reads_hg19.bigWig 204.3 Mb (ftp)(http) BIGWIG
GSM2344169_ENCFF982XQC_plus_strand_signal_of_all_reads_GRCh38.bigWig 206.6 Mb (ftp)(http) BIGWIG
GSM2344169_ENCLB214XDA_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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