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Sample GSM2344101 Query DataSets for GSM2344101
Status Public on Nov 08, 2016
Title total RNA-seq from esophagus muscularis mucosa (ENCLB581IKK)
Sample type SRA
Source name Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: esophagus muscularis mucosa
biomaterial_type: tissue
description: Esophagus muscle layer tissue sent from GTEx to the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS730TAX (SAMN05897500)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS730TAX at ENCODE;
link: Derived from ENCODE donor ENCDO451RUA;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagal muscle tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR750ETS
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB581IKK
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88509 total RNA-seq from esophagus muscularis mucosa (ENCSR750ETS)
BioSample SAMN05897500
SRA SRX2244494
Named Annotation GSM2344101_ENCFF853ZSA_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344101_ENCFF134RAK_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344101_ENCFF553RGA_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344101_ENCFF391EKX_plus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344101_ENCFF084ORQ_transcript_quantifications_hg19.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2344101_ENCFF107JVZ_transcript_quantifications_GRCh38.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344101_ENCFF134RAK_plus_strand_signal_of_unique_reads_GRCh38.bigWig 97.8 Mb (ftp)(http) BIGWIG
GSM2344101_ENCFF391EKX_plus_strand_signal_of_all_reads_GRCh38.bigWig 106.6 Mb (ftp)(http) BIGWIG
GSM2344101_ENCFF413HMS_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344101_ENCFF451YKO_minus_strand_signal_of_unique_reads_hg19.bigWig 93.4 Mb (ftp)(http) BIGWIG
GSM2344101_ENCFF553RGA_minus_strand_signal_of_all_reads_GRCh38.bigWig 100.1 Mb (ftp)(http) BIGWIG
GSM2344101_ENCFF650KLZ_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344101_ENCFF681HYE_minus_strand_signal_of_all_reads_hg19.bigWig 99.4 Mb (ftp)(http) BIGWIG
GSM2344101_ENCFF853ZSA_minus_strand_signal_of_unique_reads_GRCh38.bigWig 93.4 Mb (ftp)(http) BIGWIG
GSM2344101_ENCFF927AAU_plus_strand_signal_of_all_reads_hg19.bigWig 103.4 Mb (ftp)(http) BIGWIG
GSM2344101_ENCFF978ZUX_plus_strand_signal_of_unique_reads_hg19.bigWig 97.8 Mb (ftp)(http) BIGWIG
GSM2344101_ENCLB581IKK_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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