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Sample GSM2344082 Query DataSets for GSM2344082
Status Public on Nov 08, 2016
Title total RNA-seq from omental fat pad (ENCLB919SXV)
Sample type SRA
 
Source name Homo sapiens omental fat pad tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: omental fat pad
biomaterial_type: tissue
description: Visceral adipose tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS517FSZ (SAMN05897274)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS517FSZ at ENCODE; https://www.encodeproject.org/ENCBS517FSZ/
link: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/1074ce07-56a9-4334-b7fb-9d0f1d9c9977/@@download/attachment/296314.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR729CAZ/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's adipose tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR729CAZ
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB919SXV
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE88497 total RNA-seq from omental fat pad (ENCSR729CAZ)
Relations
BioSample SAMN05897274
SRA SRX2244503
Named Annotation GSM2344082_ENCFF665KML_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344082_ENCFF036ARD_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344082_ENCFF879MQB_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344082_ENCFF646OQV_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344082_ENCFF036ARD_plus_strand_signal_of_unique_reads_GRCh38.bigWig 192.1 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF099XRG_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344082_ENCFF234RCB_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344082_ENCFF253GMS_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2344082_ENCFF541JMH_plus_strand_signal_of_unique_reads_hg19.bigWig 192.0 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF555ZIX_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344082_ENCFF646OQV_minus_strand_signal_of_unique_reads_GRCh38.bigWig 181.2 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF665KML_plus_strand_signal_of_all_reads_GRCh38.bigWig 202.8 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF779HKT_minus_strand_signal_of_all_reads_hg19.bigWig 194.7 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF822GLG_minus_strand_signal_of_unique_reads_hg19.bigWig 184.0 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF879MQB_minus_strand_signal_of_all_reads_GRCh38.bigWig 195.7 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF903VYD_plus_strand_signal_of_all_reads_hg19.bigWig 201.8 Mb (ftp)(http) BIGWIG
GSM2344082_ENCLB919SXV_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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