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Sample GSM2344082 Query DataSets for GSM2344082
Status Public on Nov 08, 2016
Title total RNA-seq from omental fat pad (ENCLB919SXV)
Sample type SRA
Source name Homo sapiens omental fat pad tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: omental fat pad
biomaterial_type: tissue
description: Visceral adipose tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS517FSZ (SAMN05897274)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS517FSZ at ENCODE;
link: Derived from ENCODE donor ENCDO845WKR;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's adipose tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR729CAZ
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB919SXV
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88497 total RNA-seq from omental fat pad (ENCSR729CAZ)
BioSample SAMN05897274
SRA SRX2244503
Named Annotation GSM2344082_ENCFF665KML_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344082_ENCFF036ARD_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344082_ENCFF879MQB_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344082_ENCFF646OQV_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344082_ENCFF036ARD_plus_strand_signal_of_unique_reads_GRCh38.bigWig 192.1 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF099XRG_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344082_ENCFF234RCB_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344082_ENCFF253GMS_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2344082_ENCFF541JMH_plus_strand_signal_of_unique_reads_hg19.bigWig 192.0 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF555ZIX_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344082_ENCFF646OQV_minus_strand_signal_of_unique_reads_GRCh38.bigWig 181.2 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF665KML_plus_strand_signal_of_all_reads_GRCh38.bigWig 202.8 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF779HKT_minus_strand_signal_of_all_reads_hg19.bigWig 194.7 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF822GLG_minus_strand_signal_of_unique_reads_hg19.bigWig 184.0 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF879MQB_minus_strand_signal_of_all_reads_GRCh38.bigWig 195.7 Mb (ftp)(http) BIGWIG
GSM2344082_ENCFF903VYD_plus_strand_signal_of_all_reads_hg19.bigWig 201.8 Mb (ftp)(http) BIGWIG
GSM2344082_ENCLB919SXV_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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