GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2344072 Query DataSets for GSM2344072
Status Public on Nov 08, 2016
Title total RNA-seq from ascending aorta (ENCLB313RZG)
Sample type SRA
Source name Homo sapiens ascending aorta tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: ascending aorta
biomaterial_type: tissue
description: Vagina aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS482ANH (SAMN05897237)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS482ANH at ENCODE;
link: Derived from ENCODE donor ENCDO793LXB;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's aorta tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR719PXC
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-08-04
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB313RZG
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88491 total RNA-seq from ascending aorta (ENCSR719PXC)
BioSample SAMN05897237
SRA SRX2244479
Named Annotation GSM2344072_ENCFF019YOH_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344072_ENCFF312PQO_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344072_ENCFF988HMW_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344072_ENCFF159SDU_plus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344072_ENCFF019YOH_minus_strand_signal_of_unique_reads_GRCh38.bigWig 23.4 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF159SDU_plus_strand_signal_of_all_reads_GRCh38.bigWig 27.3 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF202PBO_minus_strand_signal_of_unique_reads_hg19.bigWig 23.6 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF298TQR_minus_strand_signal_of_all_reads_hg19.bigWig 25.7 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF312PQO_minus_strand_signal_of_all_reads_GRCh38.bigWig 26.3 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF341XVI_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344072_ENCFF362LQR_plus_strand_signal_of_all_reads_hg19.bigWig 26.1 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF381UOU_plus_strand_signal_of_unique_reads_hg19.bigWig 24.1 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF390XUQ_transcript_quantifications_hg19.tsv.gz 7.2 Mb (ftp)(http) TSV
GSM2344072_ENCFF512FHU_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344072_ENCFF938UCO_transcript_quantifications_GRCh38.tsv.gz 7.3 Mb (ftp)(http) TSV
GSM2344072_ENCFF988HMW_plus_strand_signal_of_unique_reads_GRCh38.bigWig 24.1 Mb (ftp)(http) BIGWIG
GSM2344072_ENCLB313RZG_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap