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Sample GSM2344072 Query DataSets for GSM2344072
Status Public on Nov 08, 2016
Title total RNA-seq from ascending aorta (ENCLB313RZG)
Sample type SRA
 
Source name Homo sapiens ascending aorta tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: ascending aorta
biomaterial_type: tissue
description: Vagina aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS482ANH (SAMN05897237)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS482ANH at ENCODE; https://www.encodeproject.org/ENCBS482ANH/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/6d603d9c-922a-40e3-b930-3099aa766a0b/@@download/attachment/296667.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR719PXC/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's aorta tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR719PXC
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-08-04
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB313RZG
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE88491 total RNA-seq from ascending aorta (ENCSR719PXC)
Relations
BioSample SAMN05897237
SRA SRX2244479
Named Annotation GSM2344072_ENCFF019YOH_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344072_ENCFF312PQO_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344072_ENCFF988HMW_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344072_ENCFF159SDU_plus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344072_ENCFF019YOH_minus_strand_signal_of_unique_reads_GRCh38.bigWig 23.4 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF159SDU_plus_strand_signal_of_all_reads_GRCh38.bigWig 27.3 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF202PBO_minus_strand_signal_of_unique_reads_hg19.bigWig 23.6 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF298TQR_minus_strand_signal_of_all_reads_hg19.bigWig 25.7 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF312PQO_minus_strand_signal_of_all_reads_GRCh38.bigWig 26.3 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF341XVI_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344072_ENCFF362LQR_plus_strand_signal_of_all_reads_hg19.bigWig 26.1 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF381UOU_plus_strand_signal_of_unique_reads_hg19.bigWig 24.1 Mb (ftp)(http) BIGWIG
GSM2344072_ENCFF390XUQ_transcript_quantifications_hg19.tsv.gz 7.2 Mb (ftp)(http) TSV
GSM2344072_ENCFF512FHU_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344072_ENCFF938UCO_transcript_quantifications_GRCh38.tsv.gz 7.3 Mb (ftp)(http) TSV
GSM2344072_ENCFF988HMW_plus_strand_signal_of_unique_reads_GRCh38.bigWig 24.1 Mb (ftp)(http) BIGWIG
GSM2344072_ENCLB313RZG_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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