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Sample GSM2344057 Query DataSets for GSM2344057
Status Public on Nov 08, 2016
Title total RNA-seq from subcutaneous adipose tissue (ENCLB627TOE)
Sample type SRA
Source name Homo sapiens subcutaneous adipose tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: subcutaneous adipose tissue
biomaterial_type: tissue
description: Subcutaneous adipose tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS171DKK (SAMN05896939)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS171DKK at ENCODE;
link: Derived from ENCODE donor ENCDO845WKR;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's adipose tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR708VVE
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB627TOE
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88482 total RNA-seq from subcutaneous adipose tissue (ENCSR708VVE)
BioSample SAMN05896939
SRA SRX2244471
Named Annotation GSM2344057_ENCFF729APZ_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344057_ENCFF394QYI_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344057_ENCFF361EHG_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344057_ENCFF651FEM_plus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344057_ENCFF119AUU_minus_strand_signal_of_all_reads_hg19.bigWig 147.9 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF236ZQT_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2344057_ENCFF245COB_plus_strand_signal_of_all_reads_hg19.bigWig 150.9 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF252BIR_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344057_ENCFF343EFT_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344057_ENCFF361EHG_minus_strand_signal_of_all_reads_GRCh38.bigWig 150.0 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF372XSI_minus_strand_signal_of_unique_reads_hg19.bigWig 139.7 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF394QYI_plus_strand_signal_of_all_reads_GRCh38.bigWig 153.0 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF505ZVY_plus_strand_signal_of_unique_reads_hg19.bigWig 141.1 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF651FEM_plus_strand_signal_of_unique_reads_GRCh38.bigWig 140.7 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF729APZ_minus_strand_signal_of_unique_reads_GRCh38.bigWig 139.3 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF857WCE_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344057_ENCLB627TOE_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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