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Sample GSM2344057 Query DataSets for GSM2344057
Status Public on Nov 08, 2016
Title total RNA-seq from subcutaneous adipose tissue (ENCLB627TOE)
Sample type SRA
 
Source name Homo sapiens subcutaneous adipose tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: subcutaneous adipose tissue
biomaterial_type: tissue
description: Subcutaneous adipose tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS171DKK (SAMN05896939)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS171DKK at ENCODE; https://www.encodeproject.org/ENCBS171DKK/
link: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/b001a111-a741-4494-8b9a-286f6682275c/@@download/attachment/296161.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR708VVE/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's adipose tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR708VVE
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB627TOE
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE88482 total RNA-seq from subcutaneous adipose tissue (ENCSR708VVE)
Relations
BioSample SAMN05896939
SRA SRX2244471
Named Annotation GSM2344057_ENCFF729APZ_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344057_ENCFF394QYI_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344057_ENCFF361EHG_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344057_ENCFF651FEM_plus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344057_ENCFF119AUU_minus_strand_signal_of_all_reads_hg19.bigWig 147.9 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF236ZQT_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2344057_ENCFF245COB_plus_strand_signal_of_all_reads_hg19.bigWig 150.9 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF252BIR_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344057_ENCFF343EFT_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344057_ENCFF361EHG_minus_strand_signal_of_all_reads_GRCh38.bigWig 150.0 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF372XSI_minus_strand_signal_of_unique_reads_hg19.bigWig 139.7 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF394QYI_plus_strand_signal_of_all_reads_GRCh38.bigWig 153.0 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF505ZVY_plus_strand_signal_of_unique_reads_hg19.bigWig 141.1 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF651FEM_plus_strand_signal_of_unique_reads_GRCh38.bigWig 140.7 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF729APZ_minus_strand_signal_of_unique_reads_GRCh38.bigWig 139.3 Mb (ftp)(http) BIGWIG
GSM2344057_ENCFF857WCE_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2344057_ENCLB627TOE_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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