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Sample GSM2344053 Query DataSets for GSM2344053
Status Public on Nov 08, 2016
Title total RNA-seq from prostate gland (ENCLB643EVS)
Sample type SRA
Source name Homo sapiens prostate gland tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: prostate gland
biomaterial_type: tissue
description: Prostate aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS291PVP (SAMN05897060)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS291PVP at ENCODE;
link: Derived from ENCODE donor ENCDO451RUA;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's prostate tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR701TST
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-08-04
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB643EVS
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88479 total RNA-seq from prostate gland (ENCSR701TST)
BioSample SAMN05897060
SRA SRX2244445
Named Annotation GSM2344053_ENCFF734ZWN_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344053_ENCFF500APC_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344053_ENCFF473KUH_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344053_ENCFF904WGC_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344053_ENCFF040IKR_minus_strand_signal_of_all_reads_hg19.bigWig 96.0 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF075LUO_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344053_ENCFF078JCV_minus_strand_signal_of_unique_reads_hg19.bigWig 89.5 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF110THT_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344053_ENCFF473KUH_minus_strand_signal_of_all_reads_GRCh38.bigWig 96.7 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF499KKR_gene_quantifications_GRCh38.tsv.gz 2.7 Mb (ftp)(http) TSV
GSM2344053_ENCFF500APC_plus_strand_signal_of_unique_reads_GRCh38.bigWig 91.0 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF727GZI_plus_strand_signal_of_all_reads_hg19.bigWig 97.2 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF734ZWN_plus_strand_signal_of_all_reads_GRCh38.bigWig 98.1 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF847XAH_plus_strand_signal_of_unique_reads_hg19.bigWig 91.4 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF904WGC_minus_strand_signal_of_unique_reads_GRCh38.bigWig 89.3 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF978IVT_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2344053_ENCLB643EVS_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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