NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2344053 Query DataSets for GSM2344053
Status Public on Nov 08, 2016
Title total RNA-seq from prostate gland (ENCLB643EVS)
Sample type SRA
 
Source name Homo sapiens prostate gland tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: prostate gland
biomaterial_type: tissue
description: Prostate aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS291PVP (SAMN05897060)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS291PVP at ENCODE; https://www.encodeproject.org/ENCBS291PVP/
link: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/76457077-910c-46d1-b677-637246e4577f/@@download/attachment/296601.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR701TST/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's prostate tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR701TST
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-08-04
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB643EVS
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE88479 total RNA-seq from prostate gland (ENCSR701TST)
Relations
BioSample SAMN05897060
SRA SRX2244445
Named Annotation GSM2344053_ENCFF734ZWN_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344053_ENCFF500APC_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344053_ENCFF473KUH_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344053_ENCFF904WGC_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344053_ENCFF040IKR_minus_strand_signal_of_all_reads_hg19.bigWig 96.0 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF075LUO_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2344053_ENCFF078JCV_minus_strand_signal_of_unique_reads_hg19.bigWig 89.5 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF110THT_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2344053_ENCFF473KUH_minus_strand_signal_of_all_reads_GRCh38.bigWig 96.7 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF499KKR_gene_quantifications_GRCh38.tsv.gz 2.7 Mb (ftp)(http) TSV
GSM2344053_ENCFF500APC_plus_strand_signal_of_unique_reads_GRCh38.bigWig 91.0 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF727GZI_plus_strand_signal_of_all_reads_hg19.bigWig 97.2 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF734ZWN_plus_strand_signal_of_all_reads_GRCh38.bigWig 98.1 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF847XAH_plus_strand_signal_of_unique_reads_hg19.bigWig 91.4 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF904WGC_minus_strand_signal_of_unique_reads_GRCh38.bigWig 89.3 Mb (ftp)(http) BIGWIG
GSM2344053_ENCFF978IVT_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2344053_ENCLB643EVS_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap