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Sample GSM2343886 Query DataSets for GSM2343886
Status Public on Nov 08, 2016
Title small RNA-seq from spleen (ENCLB451RLT)
Sample type SRA
 
Source name Homo sapiens spleen tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: spleen
biomaterial_type: tissue
description: Spleen tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS379XNT (SAMN05897134)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS379XNT at ENCODE; https://www.encodeproject.org/ENCBS379XNT/
link: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/2b7e0715-ae70-4a42-b11c-e309471183b4/@@download/attachment/LID296621.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR587CPE/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR587CPE
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-23
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB451RLT
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE88379 small RNA-seq from spleen (ENCSR587CPE)
Relations
BioSample SAMN05897134
SRA SRX2244279
Named Annotation GSM2343886_ENCFF512QGJ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343886_ENCFF217BKW_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343886_ENCFF696SPS_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343886_ENCFF127ZPN_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343886_ENCFF048EGX_minus_strand_signal_of_unique_reads_hg19.bigWig 1.0 Mb (ftp)(http) BIGWIG
GSM2343886_ENCFF127ZPN_minus_strand_signal_of_unique_reads_GRCh38.bigWig 958.0 Kb (ftp)(http) BIGWIG
GSM2343886_ENCFF217BKW_plus_strand_signal_of_all_reads_GRCh38.bigWig 4.8 Mb (ftp)(http) BIGWIG
GSM2343886_ENCFF223RVK_gene_quantifications_hg19.tsv.gz 266.8 Kb (ftp)(http) TSV
GSM2343886_ENCFF512QGJ_plus_strand_signal_of_unique_reads_GRCh38.bigWig 996.4 Kb (ftp)(http) BIGWIG
GSM2343886_ENCFF572VHV_minus_strand_signal_of_all_reads_hg19.bigWig 4.5 Mb (ftp)(http) BIGWIG
GSM2343886_ENCFF624PWP_gene_quantifications_GRCh38.tsv.gz 281.1 Kb (ftp)(http) TSV
GSM2343886_ENCFF696SPS_minus_strand_signal_of_all_reads_GRCh38.bigWig 4.2 Mb (ftp)(http) BIGWIG
GSM2343886_ENCFF879CYI_plus_strand_signal_of_all_reads_hg19.bigWig 4.5 Mb (ftp)(http) BIGWIG
GSM2343886_ENCFF913XHC_plus_strand_signal_of_unique_reads_hg19.bigWig 1.1 Mb (ftp)(http) BIGWIG
GSM2343886_ENCLB451RLT_README.txt.gz 1.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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