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Sample GSM2343865 Query DataSets for GSM2343865
Status Public on Nov 08, 2016
Title total RNA-seq from right atrium auricular region (ENCLB471FWT)
Sample type SRA
Source name Homo sapiens right atrium auricular region tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: right atrium auricular region
biomaterial_type: tissue
description: Atrial appendage tissue from received by the Gingeras lab to do RNA-Seq assay on from GTEx.
biosample encode accession: ENCBS357SRJ (SAMN05897119)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS357SRJ at ENCODE;
link: Derived from ENCODE donor ENCDO793LXB;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's heart tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR571RXE
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB471FWT
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88367 total RNA-seq from right atrium auricular region (ENCSR571RXE)
BioSample SAMN05897119
SRA SRX2244255
Named Annotation GSM2343865_ENCFF206QCW_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343865_ENCFF034FRY_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343865_ENCFF640DNK_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343865_ENCFF536URY_plus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343865_ENCFF014PNN_plus_strand_signal_of_unique_reads_hg19.bigWig 87.6 Mb (ftp)(http) BIGWIG
GSM2343865_ENCFF034FRY_minus_strand_signal_of_unique_reads_GRCh38.bigWig 85.9 Mb (ftp)(http) BIGWIG
GSM2343865_ENCFF132SDD_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2343865_ENCFF206DFQ_transcript_quantifications_GRCh38.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2343865_ENCFF206QCW_plus_strand_signal_of_unique_reads_GRCh38.bigWig 87.9 Mb (ftp)(http) BIGWIG
GSM2343865_ENCFF264SIZ_minus_strand_signal_of_unique_reads_hg19.bigWig 85.5 Mb (ftp)(http) BIGWIG
GSM2343865_ENCFF273YMM_minus_strand_signal_of_all_reads_hg19.bigWig 91.4 Mb (ftp)(http) BIGWIG
GSM2343865_ENCFF511TBA_transcript_quantifications_hg19.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2343865_ENCFF536URY_plus_strand_signal_of_all_reads_GRCh38.bigWig 95.3 Mb (ftp)(http) BIGWIG
GSM2343865_ENCFF640DNK_minus_strand_signal_of_all_reads_GRCh38.bigWig 92.1 Mb (ftp)(http) BIGWIG
GSM2343865_ENCFF701KTC_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2343865_ENCFF762GVG_plus_strand_signal_of_all_reads_hg19.bigWig 94.5 Mb (ftp)(http) BIGWIG
GSM2343865_ENCLB471FWT_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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