GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2343816 Query DataSets for GSM2343816
Status Public on Nov 08, 2016
Title total RNA-seq from thyroid gland (ENCLB637GXV)
Sample type SRA
Source name Homo sapiens thyroid gland tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: thyroid gland
biomaterial_type: tissue
description: Thyroid Gland GTEx tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS376ASB (SAMN05897132)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS376ASB at ENCODE;
link: Derived from ENCODE donor ENCDO845WKR;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
biological replicate number: 1
technical replicate number: 2
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's thyroid tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR532LJV
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-03-07
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB637GXV
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE88340 total RNA-seq from thyroid gland (ENCSR532LJV)
BioSample SAMN05897132
SRA SRX2244216
Named Annotation GSM2343816_ENCFF801ZJX_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343816_ENCFF173SJH_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343816_ENCFF649TYF_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343816_ENCFF207BKV_plus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343816_ENCFF167CJB_plus_strand_signal_of_all_reads_hg19.bigWig 181.5 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF173SJH_minus_strand_signal_of_all_reads_GRCh38.bigWig 172.3 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF207BKV_plus_strand_signal_of_unique_reads_GRCh38.bigWig 171.7 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF410EQZ_plus_strand_signal_of_unique_reads_hg19.bigWig 171.9 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF483CNM_minus_strand_signal_of_all_reads_hg19.bigWig 171.6 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF500WKN_minus_strand_signal_of_unique_reads_hg19.bigWig 160.9 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF646IRK_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2343816_ENCFF649TYF_minus_strand_signal_of_unique_reads_GRCh38.bigWig 160.9 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF793OTG_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2343816_ENCFF801ZJX_plus_strand_signal_of_all_reads_GRCh38.bigWig 182.2 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF950JBH_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2343816_ENCFF962ZAQ_gene_quantifications_GRCh38.tsv.gz 2.7 Mb (ftp)(http) TSV
GSM2343816_ENCLB637GXV_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap