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Sample GSM2343816 Query DataSets for GSM2343816
Status Public on Nov 08, 2016
Title total RNA-seq from thyroid gland (ENCLB637GXV)
Sample type SRA
 
Source name Homo sapiens thyroid gland tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: thyroid gland
biomaterial_type: tissue
description: Thyroid Gland GTEx tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS376ASB (SAMN05897132)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS376ASB at ENCODE; https://www.encodeproject.org/ENCBS376ASB/
link: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/77923c25-65c2-4770-a52e-d8ac462cd9de/@@download/attachment/295770.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR532LJV/
***************
biological replicate number: 1
technical replicate number: 2
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's thyroid tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR532LJV
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-03-07
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB637GXV
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE88340 total RNA-seq from thyroid gland (ENCSR532LJV)
Relations
BioSample SAMN05897132
SRA SRX2244216
Named Annotation GSM2343816_ENCFF801ZJX_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343816_ENCFF173SJH_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343816_ENCFF649TYF_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343816_ENCFF207BKV_plus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343816_ENCFF167CJB_plus_strand_signal_of_all_reads_hg19.bigWig 181.5 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF173SJH_minus_strand_signal_of_all_reads_GRCh38.bigWig 172.3 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF207BKV_plus_strand_signal_of_unique_reads_GRCh38.bigWig 171.7 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF410EQZ_plus_strand_signal_of_unique_reads_hg19.bigWig 171.9 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF483CNM_minus_strand_signal_of_all_reads_hg19.bigWig 171.6 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF500WKN_minus_strand_signal_of_unique_reads_hg19.bigWig 160.9 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF646IRK_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2343816_ENCFF649TYF_minus_strand_signal_of_unique_reads_GRCh38.bigWig 160.9 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF793OTG_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2343816_ENCFF801ZJX_plus_strand_signal_of_all_reads_GRCh38.bigWig 182.2 Mb (ftp)(http) BIGWIG
GSM2343816_ENCFF950JBH_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2343816_ENCFF962ZAQ_gene_quantifications_GRCh38.tsv.gz 2.7 Mb (ftp)(http) TSV
GSM2343816_ENCLB637GXV_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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