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Sample GSM2343785 Query DataSets for GSM2343785
Status Public on Nov 08, 2016
Title total RNA-seq from esophagus squamous epithelium (ENCLB736YFJ)
Sample type SRA
Source name Homo sapiens esophagus squamous epithelium tissue female adult (51 year)
Organism Homo sapiens
Characteristics tissue_type: esophagus squamous epithelium
biomaterial_type: tissue
description: Esophagus mucosa tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS842VSS (SAMN05897621)
age: 51 year
dev stage: adult
donor_id: ENCDO271OUW
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS842VSS at ENCODE;
link: Derived from ENCODE donor ENCDO271OUW;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections from the mucosa of the esophagus obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR510MIA
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB736YFJ
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88323 total RNA-seq from esophagus squamous epithelium (ENCSR510MIA)
BioSample SAMN05897621
SRA SRX2244175
Named Annotation GSM2343785_ENCFF659QLY_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343785_ENCFF950TDJ_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343785_ENCFF790EGV_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343785_ENCFF980ONF_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343785_ENCFF158QIJ_transcript_quantifications_GRCh38.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2343785_ENCFF186UQB_minus_strand_signal_of_unique_reads_hg19.bigWig 59.9 Mb (ftp)(http) BIGWIG
GSM2343785_ENCFF560ZBX_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2343785_ENCFF659QLY_minus_strand_signal_of_all_reads_GRCh38.bigWig 66.0 Mb (ftp)(http) BIGWIG
GSM2343785_ENCFF693UMX_transcript_quantifications_hg19.tsv.gz 7.5 Mb (ftp)(http) TSV
GSM2343785_ENCFF790EGV_plus_strand_signal_of_unique_reads_GRCh38.bigWig 61.7 Mb (ftp)(http) BIGWIG
GSM2343785_ENCFF795PBG_plus_strand_signal_of_all_reads_hg19.bigWig 66.9 Mb (ftp)(http) BIGWIG
GSM2343785_ENCFF809VEU_minus_strand_signal_of_all_reads_hg19.bigWig 65.4 Mb (ftp)(http) BIGWIG
GSM2343785_ENCFF902LXW_plus_strand_signal_of_unique_reads_hg19.bigWig 61.7 Mb (ftp)(http) BIGWIG
GSM2343785_ENCFF944ZJI_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2343785_ENCFF950TDJ_plus_strand_signal_of_all_reads_GRCh38.bigWig 67.6 Mb (ftp)(http) BIGWIG
GSM2343785_ENCFF980ONF_minus_strand_signal_of_unique_reads_GRCh38.bigWig 59.9 Mb (ftp)(http) BIGWIG
GSM2343785_ENCLB736YFJ_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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