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Sample GSM2343776 Query DataSets for GSM2343776
Status Public on Nov 08, 2016
Title total RNA-seq from right lobe of liver (ENCLB381PQE)
Sample type SRA
Source name Homo sapiens right lobe of liver tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: right lobe of liver
biomaterial_type: tissue
description: Liver tissue from a 53 year old female received by the Gingeras lab to do RNA-Seq assay on from GTEx.
biosample encode accession: ENCBS796JPW (SAMN05897573)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS796JPW at ENCODE;
link: Derived from ENCODE donor ENCDO793LXB;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR504QMK
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-02-18
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB381PQE
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88318 total RNA-seq from right lobe of liver (ENCSR504QMK)
BioSample SAMN05897573
SRA SRX2244163
Named Annotation GSM2343776_ENCFF704ZJM_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343776_ENCFF938GIK_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343776_ENCFF986KUQ_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343776_ENCFF330MOG_plus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343776_ENCFF032QLX_transcript_quantifications_GRCh38.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2343776_ENCFF170HLB_plus_strand_signal_of_all_reads_hg19.bigWig 96.3 Mb (ftp)(http) BIGWIG
GSM2343776_ENCFF280YNO_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2343776_ENCFF330MOG_plus_strand_signal_of_unique_reads_GRCh38.bigWig 91.1 Mb (ftp)(http) BIGWIG
GSM2343776_ENCFF704ZJM_minus_strand_signal_of_all_reads_GRCh38.bigWig 97.3 Mb (ftp)(http) BIGWIG
GSM2343776_ENCFF760MZR_minus_strand_signal_of_all_reads_hg19.bigWig 96.1 Mb (ftp)(http) BIGWIG
GSM2343776_ENCFF787ADQ_minus_strand_signal_of_unique_reads_hg19.bigWig 88.6 Mb (ftp)(http) BIGWIG
GSM2343776_ENCFF791LAQ_plus_strand_signal_of_unique_reads_hg19.bigWig 91.2 Mb (ftp)(http) BIGWIG
GSM2343776_ENCFF938GIK_minus_strand_signal_of_unique_reads_GRCh38.bigWig 88.8 Mb (ftp)(http) BIGWIG
GSM2343776_ENCFF964JAM_transcript_quantifications_hg19.tsv.gz 7.5 Mb (ftp)(http) TSV
GSM2343776_ENCFF979EDZ_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2343776_ENCFF986KUQ_plus_strand_signal_of_all_reads_GRCh38.bigWig 97.4 Mb (ftp)(http) BIGWIG
GSM2343776_ENCLB381PQE_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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