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Sample GSM2343589 Query DataSets for GSM2343589
Status Public on Nov 08, 2016
Title total RNA-seq from testis (ENCLB270TKT)
Sample type SRA
 
Source name Homo sapiens testis tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: testis
biomaterial_type: tissue
description: Testis aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS255MJZ (SAMN05897027)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS255MJZ at ENCODE; https://www.encodeproject.org/ENCBS255MJZ/
link: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/0dd40e30-4b71-4ef4-9678-4c41c0716813/@@download/attachment/296607.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR344MQK/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR344MQK
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-08-04
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB270TKT
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE88206 total RNA-seq from testis (ENCSR344MQK)
Relations
BioSample SAMN05897027
SRA SRX2243971
Named Annotation GSM2343589_ENCFF789UXA_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343589_ENCFF789SCA_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343589_ENCFF111UWE_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343589_ENCFF625YUB_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343589_ENCFF111UWE_minus_strand_signal_of_unique_reads_GRCh38.bigWig 296.4 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF155PID_minus_strand_signal_of_all_reads_hg19.bigWig 319.5 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF280UPF_transcript_quantifications_hg19.tsv.gz 8.0 Mb (ftp)(http) TSV
GSM2343589_ENCFF292KCN_minus_strand_signal_of_unique_reads_hg19.bigWig 294.5 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF322EGM_plus_strand_signal_of_all_reads_hg19.bigWig 331.2 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF438ZIY_gene_quantifications_hg19.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2343589_ENCFF596FBQ_transcript_quantifications_GRCh38.tsv.gz 8.1 Mb (ftp)(http) TSV
GSM2343589_ENCFF625YUB_minus_strand_signal_of_all_reads_GRCh38.bigWig 322.8 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF637UNU_plus_strand_signal_of_unique_reads_hg19.bigWig 307.7 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF789SCA_plus_strand_signal_of_unique_reads_GRCh38.bigWig 309.9 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF789UXA_plus_strand_signal_of_all_reads_GRCh38.bigWig 335.3 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF857HXK_gene_quantifications_GRCh38.tsv.gz 2.7 Mb (ftp)(http) TSV
GSM2343589_ENCLB270TKT_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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