GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2343589 Query DataSets for GSM2343589
Status Public on Nov 08, 2016
Title total RNA-seq from testis (ENCLB270TKT)
Sample type SRA
Source name Homo sapiens testis tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: testis
biomaterial_type: tissue
description: Testis aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS255MJZ (SAMN05897027)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS255MJZ at ENCODE;
link: Derived from ENCODE donor ENCDO451RUA;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR344MQK
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-08-04
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB270TKT
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88206 total RNA-seq from testis (ENCSR344MQK)
BioSample SAMN05897027
SRA SRX2243971
Named Annotation GSM2343589_ENCFF789UXA_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343589_ENCFF789SCA_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343589_ENCFF111UWE_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343589_ENCFF625YUB_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343589_ENCFF111UWE_minus_strand_signal_of_unique_reads_GRCh38.bigWig 296.4 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF155PID_minus_strand_signal_of_all_reads_hg19.bigWig 319.5 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF280UPF_transcript_quantifications_hg19.tsv.gz 8.0 Mb (ftp)(http) TSV
GSM2343589_ENCFF292KCN_minus_strand_signal_of_unique_reads_hg19.bigWig 294.5 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF322EGM_plus_strand_signal_of_all_reads_hg19.bigWig 331.2 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF438ZIY_gene_quantifications_hg19.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2343589_ENCFF596FBQ_transcript_quantifications_GRCh38.tsv.gz 8.1 Mb (ftp)(http) TSV
GSM2343589_ENCFF625YUB_minus_strand_signal_of_all_reads_GRCh38.bigWig 322.8 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF637UNU_plus_strand_signal_of_unique_reads_hg19.bigWig 307.7 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF789SCA_plus_strand_signal_of_unique_reads_GRCh38.bigWig 309.9 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF789UXA_plus_strand_signal_of_all_reads_GRCh38.bigWig 335.3 Mb (ftp)(http) BIGWIG
GSM2343589_ENCFF857HXK_gene_quantifications_GRCh38.tsv.gz 2.7 Mb (ftp)(http) TSV
GSM2343589_ENCLB270TKT_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap