GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2343283 Query DataSets for GSM2343283
Status Public on Nov 08, 2016
Title total RNA-seq from vagina (ENCLB757UWS)
Sample type SRA
Source name Homo sapiens vagina tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: vagina
biomaterial_type: tissue
description: Vagina aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS158OEU (SAMN05896924)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS158OEU at ENCODE;
link: Derived from ENCODE donor ENCDO793LXB;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's vaginal tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR146LBD
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-08-04
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB757UWS
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88064 total RNA-seq from vagina (ENCSR146LBD)
BioSample SAMN05896924
SRA SRX2243703
Named Annotation GSM2343283_ENCFF627PWV_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343283_ENCFF081GEL_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343283_ENCFF042QTN_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343283_ENCFF642TGI_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343283_ENCFF042QTN_minus_strand_signal_of_unique_reads_GRCh38.bigWig 64.1 Mb (ftp)(http) BIGWIG
GSM2343283_ENCFF046MKE_minus_strand_signal_of_unique_reads_hg19.bigWig 64.1 Mb (ftp)(http) BIGWIG
GSM2343283_ENCFF081GEL_plus_strand_signal_of_all_reads_GRCh38.bigWig 71.5 Mb (ftp)(http) BIGWIG
GSM2343283_ENCFF545OVI_plus_strand_signal_of_unique_reads_hg19.bigWig 66.4 Mb (ftp)(http) BIGWIG
GSM2343283_ENCFF581TOU_transcript_quantifications_GRCh38.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2343283_ENCFF627PWV_plus_strand_signal_of_unique_reads_GRCh38.bigWig 66.4 Mb (ftp)(http) BIGWIG
GSM2343283_ENCFF642TGI_minus_strand_signal_of_all_reads_GRCh38.bigWig 70.3 Mb (ftp)(http) BIGWIG
GSM2343283_ENCFF666UUL_plus_strand_signal_of_all_reads_hg19.bigWig 70.7 Mb (ftp)(http) BIGWIG
GSM2343283_ENCFF689CTL_minus_strand_signal_of_all_reads_hg19.bigWig 69.7 Mb (ftp)(http) BIGWIG
GSM2343283_ENCFF855LJY_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2343283_ENCFF916ODF_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2343283_ENCFF968GGR_transcript_quantifications_hg19.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2343283_ENCLB757UWS_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap