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Sample GSM2343179 Query DataSets for GSM2343179
Status Public on Nov 08, 2016
Title total RNA-seq from uterus (ENCLB929UGW)
Sample type SRA
Source name Homo sapiens uterus tissue female adult (51 year)
Organism Homo sapiens
Characteristics tissue_type: uterus
biomaterial_type: tissue
description: Uterus aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS887WTT (SAMN05897667)
dev stage: adult
Sex: female
donor_id: ENCDO271OUW
age: 51 year
lab: Thomas Gingeras, CSHL
link: ENCBS887WTT at ENCODE;
link: Derived from ENCODE donor ENCDO271OUW;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's uterus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR071ZLM
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-08-04
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB929UGW
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE88005 total RNA-seq from uterus (ENCSR071ZLM)
BioSample SAMN05897667
SRA SRX2244920
Named Annotation GSM2343179_ENCFF724ZJB_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343179_ENCFF687IWQ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343179_ENCFF111GUA_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343179_ENCFF827USX_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343179_ENCFF111GUA_minus_strand_signal_of_unique_reads_GRCh38.bigWig 31.1 Mb (ftp)(http) BIGWIG
GSM2343179_ENCFF190VLV_minus_strand_signal_of_unique_reads_hg19.bigWig 31.1 Mb (ftp)(http) BIGWIG
GSM2343179_ENCFF278CKI_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2343179_ENCFF311GFL_minus_strand_signal_of_all_reads_hg19.bigWig 33.6 Mb (ftp)(http) BIGWIG
GSM2343179_ENCFF315DBK_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2343179_ENCFF447ZQL_transcript_quantifications_hg19.tsv.gz 7.3 Mb (ftp)(http) TSV
GSM2343179_ENCFF497MII_plus_strand_signal_of_unique_reads_hg19.bigWig 32.2 Mb (ftp)(http) BIGWIG
GSM2343179_ENCFF630DFX_plus_strand_signal_of_all_reads_hg19.bigWig 34.9 Mb (ftp)(http) BIGWIG
GSM2343179_ENCFF687IWQ_plus_strand_signal_of_unique_reads_GRCh38.bigWig 32.2 Mb (ftp)(http) BIGWIG
GSM2343179_ENCFF724ZJB_plus_strand_signal_of_all_reads_GRCh38.bigWig 35.4 Mb (ftp)(http) BIGWIG
GSM2343179_ENCFF827USX_minus_strand_signal_of_all_reads_GRCh38.bigWig 33.7 Mb (ftp)(http) BIGWIG
GSM2343179_ENCFF903JDJ_transcript_quantifications_GRCh38.tsv.gz 7.4 Mb (ftp)(http) TSV
GSM2343179_ENCLB929UGW_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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