|
| Status |
Public on Oct 04, 2016 |
| Title |
X70 genomic DNA from whole blood |
| Sample type |
genomic |
| |
|
| Source name |
whole blood
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
age: 42
tissue: whole blood
disease state: normal
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
phenol:chloroform protocol
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
normal whole blood
|
| Data processing |
IDAT files were preprocessed and converted into beta value by minfi Bioconductor package
Tab-delimited .txt files reporting normalized (SWAN) Average Beta values are linked as supplementary files on the Series record.
|
| |
|
| Submission date |
Oct 03, 2016 |
| Last update date |
Oct 04, 2016 |
| Contact name |
Åsa Johansson |
| E-mail(s) |
asa.johansson@igp.uu.se
|
| Organization name |
Uppsala University
|
| Department |
IGP
|
| Street address |
BMC, Husarg 3
|
| City |
Uppsala |
| State/province |
Sweden |
| ZIP/Postal code |
75108 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE87571 |
Continuous Aging of the Human DNA Methylome Throughout the Human Lifespan |
|
