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Sample GSM2330235 Query DataSets for GSM2330235
Status Public on Sep 30, 2016
Title F3_050531_g541
Sample type genomic
 
Channel 1
Source name MYD25
Organism Saccharomyces bayanus
Characteristics strain name: ancestral S. uvarum strain
Biomaterial provider Monica Sanchez, Dunham Lab, University of Washington
Extracted molecule genomic DNA
Extraction protocol Extracted molecule : Genomic DNA
Extraction method : Hoffman-Winston prep http://dunham.gs.washington.edu/UWyeastDNAprep.pdf
Label Cy3
Label protocol reference URL : http://dunham.gs.washington.edu/UWAgilentDNA.pdf
 
Channel 2
Source name F3_050531_g541
Organism Saccharomyces bayanus
Characteristics strain name: evolved S. uvarum strain
Biomaterial provider Monica Sanchez, Dunham Lab, University of Washington
Extracted molecule genomic DNA
Extraction protocol Extracted molecule : Genomic DNA
Extraction method : Hoffman-Winston prep http://dunham.gs.washington.edu/UWyeastDNAprep.pdf
Label Cy5
Label protocol reference URL : http://dunham.gs.washington.edu/UWAgilentDNA.pdf
 
 
Hybridization protocol reference URL : http://dunham.gs.washington.edu/UWAgilentDNA.pdf
Scan protocol Pixel Size : 909.090909090909
Scan Date : 2012-10-16
Scan Time : 13:38:53
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505C
Scanning software : ChipScan
Scanning software version : A.8.3.1
Description F3_050531_g541
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 10.5.1.1
Datafile type : Agilent result file
 
Submission date Sep 27, 2016
Last update date Sep 30, 2016
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL22491
Series (1)
GSE87401 Differential paralog divergence modulates evolutionary outcomes in yeast

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -.343 48.55 61.57053
2 -.205 45.67244 52.639
3 .103 48.83199 45.45281
4 .117 48.22382 44.46192
5 -.048 45.8148 47.36286
6 .083 47.13421 44.5038
7 .084 48.1045 45.37616
8 .081 48.32821 45.69405
9 .456 66.69702 48.61533
10 .119 46.78683 43.07673
11 .063 44.47398 42.56149
12 -.17 1299.037 1461.049
13 -.331 744.7582 937.0355
14 -.312 568.6248 705.8871
15 -.223 717.6701 837.5806
16 -.081 723.6248 765.5695
17 .928 11685.89 6141.493
18 -.232 816.1701 958.3339
19 -.069 956.1757 1002.825
20 -.5 551.2983 779.522

Total number of rows: 45220

Table truncated, full table size 1366 Kbytes.




Supplementary file Size Download File type/resource
GSM2330235_F3_050531_g541_supplement.txt.gz 4.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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