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Sample GSM2308647

Query DataSets for GSM2308647

Status

Public on Oct 14, 2016

Title

ChIP-seq from fibroblast of arm (ENCLB305UEH)

Sample type

SRA

Source name

Homo sapiens fibroblast of arm primary cell male adult (53 years)

Organism

Homo sapiens

Characteristics

antibody: Control
cell_type: fibroblast of arm
biomaterial_type: primary cell
description: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).
biosample encode accession: ENCBS367AAA (SAMN04284355)
age: 53 year
donor_id: ENCDO336AAA
dev stage: adult
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS367AAA at ENCODE; https://www.encodeproject.org/ENCBS367AAA/
link: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183
link: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/69af4be8-3a50-4819-9642-ffb6db747469/@@download/attachment/whole_cell_extract_library_construction_v1.0.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR922FLS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR922FLS
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB305UEH
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Sep 09, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE86772

ChIP-seq from fibroblast of arm (ENCSR922FLS)

Relations

BioSample

SAMN04284355

SRA

SRX2157080

Supplementary file	Size	Download	File type/resource
GSM2308647_ENCLB305UEH_README.txt.gz	376 b	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record