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Sample GSM2308618 Query DataSets for GSM2308618
Status Public on Oct 14, 2016
Title ChIP-seq from OCI-LY3 (ENCLB627TJR)
Sample type SRA
 
Source name Homo sapiens OCI-LY3 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: OCI-LY3
biomaterial_type: immortalized cell line
description: Oci-Ly-3- Immortalized diffuse large B cell lymphoma cell line developed at the Ontario Cancer Institute
biosample encode accession: ENCBS018GXW (SAMN05733845)
age: 52 year
dev stage: adult
Sex: male
health state: B cell lymphoma
lab: Bradley Bernstein, Broad
link: ENCBS018GXW at ENCODE; https://www.encodeproject.org/ENCBS018GXW/
link: Derived from ENCODE donor ENCDO355AAA; https://www.encodeproject.org/ENCDO355AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_8800; http://web.expasy.org/cellosaurus/CVCL_8800
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR857GMX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR857GMX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR361GKY
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB627TJR
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE86758 ChIP-seq from OCI-LY3 (ENCSR857GMX)
Relations
BioSample SAMN05733845
SRA SRX2157031

Supplementary file Size Download File type/resource
GSM2308618_ENCFF178PBO_peaks_GRCh38.bigBed 2.9 Mb (ftp)(http) BIGBED
GSM2308618_ENCFF313KPJ_fold_change_over_control_hg19.bigWig 821.8 Mb (ftp)(http) BIGWIG
GSM2308618_ENCFF447CYP_peaks_GRCh38.bed.gz 1.1 Mb (ftp)(http) BED
GSM2308618_ENCFF664KCF_peaks_hg19.bigBed 2.9 Mb (ftp)(http) BIGBED
GSM2308618_ENCFF691AUY_peaks_hg19.bed.gz 1.1 Mb (ftp)(http) BED
GSM2308618_ENCFF701CNE_fold_change_over_control_GRCh38.bigWig 808.6 Mb (ftp)(http) BIGWIG
GSM2308618_ENCFF716LEB_signal_p-value_hg19.bigWig 986.9 Mb (ftp)(http) BIGWIG
GSM2308618_ENCFF932CNC_signal_p-value_GRCh38.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2308618_ENCLB627TJR_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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